Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H04
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 29 2.0
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 29 2.0
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 29 3.4
At4g00080.1 68417.m00008 invertase/pectin methylesterase inhibit... 28 4.5
At5g57210.1 68418.m07147 microtubule-associated protein-related ... 28 6.0
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 28 6.0
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 6.0
At1g24706.1 68414.m03104 expressed protein 28 6.0
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 7.9
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 27 7.9
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 27 7.9
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 237 TEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKK-TVNEQRETI 413
T NGR V TH +++ +L T K+SK +ED+ F D N S+ K V + +T+
Sbjct: 97 TTFNGR--VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 154
Query: 414 KILNTK 431
++ K
Sbjct: 155 EVNGIK 160
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 237 TEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKK-TVNEQRETI 413
T NGR V TH +++ +L T K+SK +ED+ F D N S+ K V + +T+
Sbjct: 97 TTFNGR--VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 154
Query: 414 KILNTK 431
++ K
Sbjct: 155 EVNGIK 160
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 28.7 bits (61), Expect = 3.4
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +3
Query: 228 CNNTEQNGRDIVCKTHTSRSERELYRTCPT-KLSKRELEDLYFALLDNNVSLKKTVNEQR 404
C++ D+ KTH S S+ + R C T K L+ A ++ + L+ V
Sbjct: 423 CHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQNDRLPLRTIVQINT 482
Query: 405 ETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVNEXXELIVELKRE 551
+ + K+ R+ K +E+N R K M + E+I LK E
Sbjct: 483 QVLFSEQVKM-RMMMQDKLPEKEEENSGGREDKRM-SRDNEIIKTLKEE 529
>At4g00080.1 68417.m00008 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
SP|Q42534; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 209
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 375 SLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVNEXXELIVELKREN 554
+LK ++ + T L +V+ L T + Y +DC ++ VN+ I EL R +
Sbjct: 72 ALKASLYRAKYTKAFLLKEVKNLETTLRPQYYASVHDCLDQIRDSVNQLSLAIAELDRVS 131
Query: 555 TR 560
R
Sbjct: 132 RR 133
>At5g57210.1 68418.m07147 microtubule-associated protein-related
contains some similarity to microtubule-associated
protein GI:5032258 from [Arabidopsis thaliana]; contains
Pfam profile PF00566: TBC domain
Length = 737
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 342 DLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQND 485
DL ++ +N K +N RE KIL+ K QRL +N+ G+E ++
Sbjct: 613 DLPLSIPENEPEAKSGMNIFRER-KILSGKFQRLWRLGRNLSGEETSE 659
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 330 RELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSV 500
R L++ L D+ + TV QR++ I ++ R+ + GK N CRSV
Sbjct: 400 RNLQESVNVLFDSKTA---TVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSV 453
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/94 (23%), Positives = 44/94 (46%)
Frame = +3
Query: 327 KRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKV 506
++ELE + + ++ N+ + + +L V L + K+ + R +K
Sbjct: 207 RKELEVARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKEEEAMNKD-TEVERKLKA 265
Query: 507 MVNEXXELIVELKRENTRLCERVRLLNMRLCSAK 608
V + ++ELKR+N L R L+++L SA+
Sbjct: 266 -VQDLEVQVMELKRKNRELQHEKRELSIKLDSAE 298
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 306 TCPTKLSKRELEDLYFALLDNNVSLK-KTVNEQRETIKILNTKVQRLSTARK 458
TC ++ ++ L + ++V LK K N++RE +K+L T V +ARK
Sbjct: 1136 TCSASINGNKVLFLLCFMSVSSVDLKAKIKNDEREDLKVLATGVGAALSARK 1187
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 225 NCNNTEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVS 377
NC+ + +G++ +H R Y CP S EL ++ +D N+S
Sbjct: 70 NCDWSGHDGKNSTTTSHHKRQTINCYSGCP---SSAELSSIWSFCMDLNIS 117
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 378 SSRYCREGQSKDLPTLAYLTLSGMFCRVLSQI 283
+SRY E DLPT LS +F ++S I
Sbjct: 477 TSRYAEEDFRYDLPTKLMFGLSALFISIISMI 508
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 279 SRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARK 458
S+ E E T + LE+++ L ++ KTV++Q +I N V+R T +K
Sbjct: 385 SKMEEERENTNSIYIVSELLEEIFLGLPLKSILKFKTVSKQWRSILESNLFVERRRTLQK 444
Query: 459 N 461
N
Sbjct: 445 N 445
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,712
Number of Sequences: 28952
Number of extensions: 227800
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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