Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H03
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               31   1.1  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)        29   3.3  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54277| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)                      29   4.3  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = +2

Query: 221 SRSEKXXXXXXDNKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEK 400
           +  E+      + K  + ++KL    E   +    EK+ Q+AKK++   +  E +K +EK
Sbjct: 276 TEEEEKQKEEAERKKQEKLEKLAKKKEELKERKRQEKLEQKAKKKEKERQEREKEKEREK 335

Query: 401 SILFPEEKQSFQDFEKE 451
             +  E+++  +  EKE
Sbjct: 336 ERIQQEKEKQKERREKE 352


>SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 323 VEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKELF 457
           + K I  + K K LLE  +V + K   IL  EE+  F++  +E+F
Sbjct: 61  IPKCITESVKLKDLLEELKVAREKCHEILVKEEQDLFKERREEIF 105


>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 388 FFHFCVLK*RFLLFSPLYNFFNNIGICCRFGKN*QLFYILVNFIIISCVVRF--FTSTFV 215
           FF  CVL   FLLF+P+   F+N   C +   N    +   ++I+   ++ F  FT    
Sbjct: 693 FFTICVLC--FLLFNPVSLIFSNFMDCSQLADNNARNFF--SYIVAVALLHFCNFTQLTS 748

Query: 214 WMRNCL 197
           WM+  L
Sbjct: 749 WMKTSL 754


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 299 EPAADPNIVEKI-IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKELF 457
           E AAD  +VEK  ++  K+QK     +  KK KEK +   E ++  ++    +F
Sbjct: 232 EEAADEILVEKTEVKEKKQQKRKFSFSNKKKNKEKEMDVSESEEKGEEMAPGMF 285


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 338 QRAKKQKPLLENTEVKK--GKEKSILFPEEKQSFQDFEKE 451
           +  K Q P L   E+ K  G+E + L PEEKQ F D  +E
Sbjct: 213 ESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAEE 252


>SB_11808| Best HMM Match : Glycos_transf_1 (HMM E-Value=0.0021)
          Length = 496

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 269 QNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTE 379
           + I K +V+  P  DPN+ E      K+QK  LEN +
Sbjct: 205 EGILKKIVIIPPGLDPNVFEIGEDFDKRQKAFLENVQ 241


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 329 KIIQRAKKQKPLLENTEVKKGKEKSIL 409
           K I+R K+Q   LEN+ VK GK+K  L
Sbjct: 5   KTIKRLKQQIASLENSNVKMGKQKKRL 31


>SB_54277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 555 FILTTLW-INTYPFLDEDSAVYELIPNPKWFL 647
           F LTT + I  Y +L+ED     +  NP+WF+
Sbjct: 43  FALTTSFEIGVYTYLNEDCTRESMYRNPQWFV 74


>SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)
          Length = 397

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 555 FILTTLW-INTYPFLDEDSAVYELIPNPKWFL 647
           F LTT + I  Y +L+ED     +  NP+WF+
Sbjct: 47  FALTTSFEIGVYTYLNEDCTRESMYRNPQWFV 78


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 317 WDLLQVRKELATFLYSGQLYYH 252
           WD+ QVR+EL   +Y   L+ H
Sbjct: 202 WDIKQVREELGAQVYHNMLFIH 223


>SB_11830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 277 YILVNFIIISCVVRFFTSTFVWMR 206
           Y++  F +IS    FF + FVW+R
Sbjct: 39  YLIAQFFLISQSFLFFVARFVWLR 62


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 543 TATLFILTTLWINTYPFLDEDSAVYELIPNPKW 641
           T  LFI+   +   +P +DE   V+++ P P+W
Sbjct: 885 TVNLFIMPYNYPTLFPLIDELVKVHKMKPVPRW 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,405
Number of Sequences: 59808
Number of extensions: 318083
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)