Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G23
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   127   3e-30
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   118   2e-27
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   3.7  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   3.7  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    27   8.7  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  127 bits (307), Expect = 3e-30
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +1

Query: 55  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+ AK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
           QPNSAIRKC RVQLIKNGKK+ AFV
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFV 84



 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/56 (85%), Positives = 51/56 (91%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
           P DGCLN+IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV  VSLLAL+KEKKE+P
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  118 bits (285), Expect = 2e-27
 Identities = 56/85 (65%), Positives = 65/85 (76%)
 Frame = +1

Query: 55  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+ AK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
           QPNSAIRKC RVQLIKNGKK+ AFV
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFV 84



 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/56 (85%), Positives = 51/56 (91%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
           P DGCLN+IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV  VSLLAL+KEKKE+P
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 WADKEFKKAHMGTKWKANPFGGASHAKG 201
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 WADKEFKKAHMGTKWKANPFGGASHAKG 201
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 118 WADKEFKKAHMGTKWKANPFGGASHAKG 201
           W+    + A + T WK +PFG    A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,108,184
Number of Sequences: 28952
Number of extensions: 229462
Number of successful extensions: 502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)