Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G22
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22640| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 32 0.47
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 30 1.9
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 29 4.4
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 28 5.8
SB_42423| Best HMM Match : OEP (HMM E-Value=6.7e-12) 28 5.8
SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 28 7.7
>SB_22640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 65.3 bits (152), Expect = 4e-11
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 2/203 (0%)
Frame = +3
Query: 51 LVKNEDKAIECLGGIRQLSQAYTELNKKRLGLSYQPQNKLXKKIYGDCVNTAGVLLKVKV 230
+V+N DK ++ LGG ++++A + ++ R+ ++++P + K +YGD T +LL VK
Sbjct: 38 VVRNTDKMLQALGGEAEVARAVLDPHQ-RIKVNFRPADINSKCLYGDRHATPNLLLSVKR 96
Query: 231 K--KTINGSEVKREVISTTPLGQVRKIYKFESLCDFQYLPVSKEGAGSAPPQCILEQIMP 404
+ K G E K+EV LG V +KF++L DFQY VS E P L+Q+
Sbjct: 97 RQSKDNKGYEYKQEV-----LGVVDTTFKFDNLVDFQY--VSHE---MKDP---LDQVRG 143
Query: 405 SGVDTLQFLTEPGPQFIIPSSFSRFDKPLNLDYIEXXSILQKNTSLGQDDDIHRKRRLER 584
++ L E P ++P FSR +KP+ ++ + S D ++ +
Sbjct: 144 -----IEILNEEQPLLVLPPVFSRIEKPVPYNFKPNILAGWQPASSQATTDEQEGSKMAQ 198
Query: 585 GGQPTGLKFSLTEEFPKEPHEYH 653
G ++T E P P H
Sbjct: 199 GRNRNTYAMAVTFEHPSVPVSPH 221
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 412 TPEGMIC-SNIHCGGAEPAP-SLLTGKY*KSHKDSNLYIFLTCPSGVVE 272
TP G +C + +CG P G+Y + K+S++ L CP G +E
Sbjct: 3154 TPSGYLCPTGYYCGNGTVHPYGCKPGQYQPNKKESHVKRVLYCPEGTIE 3202
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 177 KIYGDCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRKIYKFESLCDFQYLPV 347
+I C+ GVL KV + + ++ + +I T + K+ E+ C +YL +
Sbjct: 920 EIVNSCIGATGVLALAKVIQNVTYLDLSKSIIGTKGAKAIAKV--IENSCKLKYLRI 974
>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 153 QPQNKLXKKIYGDCVNTA-GVLLKVKVKKTINGSEVKR-EVISTTPLGQVRKIYK 311
+P+N L K ++GD NTA L ++ KKT N E K +V TP R + K
Sbjct: 405 KPRNDLEKGLFGDQANTARESYLSLEEKKTQNTEENKEPKVQLVTPKEMKRYLDK 459
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/65 (24%), Positives = 37/65 (56%)
Frame = +3
Query: 117 TELNKKRLGLSYQPQNKLXKKIYGDCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQV 296
+E K+R+ LSYQ + + + + + + LKV++ + + SE++++ + + Q+
Sbjct: 953 SEEEKERMELSYQRELQDQSEKHANEFES----LKVQLCRNLENSELEKDEVMKAEMNQL 1008
Query: 297 RKIYK 311
R IY+
Sbjct: 1009 RSIYE 1013
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 150 YQPQNKLXKKIYGDCVNTAGVLLKVKVKKTINGSEVKR 263
YQ + ++ +K+ + ++ LK K+ T+NGS + R
Sbjct: 283 YQGEIEMGQKVLNELQDSVNQALKPKLTNTVNGSTISR 320
>SB_42423| Best HMM Match : OEP (HMM E-Value=6.7e-12)
Length = 208
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 123 LNKKRLGLSYQPQNKLXKKIYGDCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRK 302
LN+ G +YQP +L +I + +NT+ + ++ SE +++ ++ G + +
Sbjct: 4 LNEDTNGKTYQPTEELANEITLEEINTSLNTSRKDIQAMEKSSEAYKKMFQSSKYGFLPR 63
Query: 303 IYKFES--LCDFQYLPVSKEG 359
+ F + L D ++L + +G
Sbjct: 64 LNAFGNYQLYDSKFLSTNAKG 84
>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 84 LGGIRQLSQAYTELNKKRLGLSYQPQNKLXKKIYGDC 194
L ++ L + + K + G+S+ NKL KKI DC
Sbjct: 90 LKSLKNLKEKEAKKIKDKEGISFNTNNKLTKKIAIDC 126
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 390 EQIMPSGVDTLQFLTEPGPQFIIPSSFSRFDKPLNLDYIEXXSILQKNTSLGQDDD 557
E + S ++ Q +P P FIIP F+ FD P+ + +K+ +DD
Sbjct: 329 ESVCTSESESTQIRADPKPVFIIP--FATFDDPVETNLKGKAKPSRKSPQRRDNDD 382
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,724,023
Number of Sequences: 59808
Number of extensions: 383543
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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