Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G22
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24450.1 68418.m02882 transcription factor-related low simila...    41   8e-04
At3g49410.1 68416.m05401 transcription factor-related contains w...    35   0.041
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At1g53700.1 68414.m06110 protein kinase, putative similar to cuc...    28   4.8  
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met...    28   6.3  
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa...    28   6.3  
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    27   8.3  
At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putat...    27   8.3  

>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
 Frame = +3

Query: 69  KAIECLGGIRQLSQAYTELNKKRLGLSYQPQNKLXKKIYGDCVNTAGVLLKVK---VKK- 236
           +A+E LGGI+ ++ A  E    +L L ++P++      YG+  +  G LLK+    VKK 
Sbjct: 32  RAVETLGGIQGITTA-RESTSNKLELHFRPEDPSAHPAYGERRHCNGFLLKISKEDVKKD 90

Query: 237 -------TINGSEV----KREVISTTPLGQVRKIYKFESLCDFQY-LPVSKEGAGSAPPQ 380
                   I+ S+      R  +    + +V + Y F+ + D+Q+ +P+  + A     +
Sbjct: 91  SLPESQPVISTSDACLPEVRPALCADIVARVSESYCFDGMVDYQHVIPIHADIAQQKKRK 150

Query: 381 CILEQIMPSGVDTLQFLTEPGPQFIIPSSFSRFDKPLNL 497
             +E    +G + L  + +     ++P  FS  D+P NL
Sbjct: 151 W-MEVKSLAGKNDLMDMADEDVMMLLPQFFSPKDRPDNL 188


>At3g49410.1 68416.m05401 transcription factor-related contains weak
           similarity to transcription factor IIIC63 (GI:5281316)
           [Homo sapiens]
          Length = 559

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
 Frame = +3

Query: 69  KAIECLGGIRQLSQAYTELNKKRLGLSYQPQNKLXKKIYGDCVNTAGVLLKVK---VKKT 239
           +AIE LGGI+ ++QA   ++ K L L ++P++       G+    +G LL++    +KK 
Sbjct: 32  RAIETLGGIQGITQARESISNK-LELRFRPEDPYAHPALGEQRPCSGFLLRISKQDIKKP 90

Query: 240 INGS--EVKREVI--STTP------LGQVRKIYKFESLCDFQY-LPVSKEGAGSAPPQCI 386
            + S  +  R+V     +P      + ++ + + F+ + D+Q+ +P+  + A     + +
Sbjct: 91  ESQSVLDTSRDVCLEEASPVLCADIVARLSESFHFDGMADYQHVIPIHADIAQQKKRKWM 150

Query: 387 LEQIMP-SGVDTLQFLTEPGPQFIIPSSFSRFDKPLNL 497
              + P +G   L  L +     ++P  F+  D P N+
Sbjct: 151 --DVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNV 186


>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 583

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 142 PRRFLFNSV*A*DNCLIPPKHSIALSSFLTSAREKNSRYTMTKII 8
           P  FLFNSV    + L  P H +A    + S+    S YT T +I
Sbjct: 70  PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVI 114


>At1g53700.1 68414.m06110 protein kinase, putative similar to
           cucumber protein kinase CsPK3 [Cucumis sativus]
           gi|7416109|dbj|BAA93704
          Length = 476

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
 Frame = +3

Query: 189 DCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRKIYKFESLCDFQYLPVSKEGAGS 368
           DC N  G  LKV          + R+V++   +  V    +  SL D  +LP       +
Sbjct: 114 DCPNPTGFALKV----------IDRDVLTAKKISHVETEAEILSLLDHPFLPTLYARIDA 163

Query: 369 APPQCILEQIMPSGVDTLQFLTEPGPQFIIPSSFSRF---DKPLNLDYIEXXSILQKN 533
           +   C+L    P+G   L  L    P   +P S  RF   +  + L+Y+    I+ ++
Sbjct: 164 SHYTCLLIDYCPNG--DLHSLLRKQPNNRLPISPVRFFAAEVLVALEYLHALGIVYRD 219


>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
           methionyl-tRNA synthetase, putative / MetRS, putative
           similar to methionyl-tRNA synthetase [Oryza sativa]
           GI:4091008; contains Pfam profiles PF00133: tRNA
           synthetases class I (I, L, M and V), PF01588: Putative
           tRNA binding domain
          Length = 797

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 331 KSHKDSNLYIFLTCPSGVVEITSLFTS 251
           + +KD   Y++   P G V ITS +TS
Sbjct: 263 EKYKDKVFYVWFDAPIGYVSITSCYTS 289


>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 328 SHKDSNLYIFLTCPSGVVEITSLFTSLPFMVFFTLTFRST 209
           S +   LY FLTCP+ +V + S + S+P +   T +F +T
Sbjct: 411 SPRFDTLYTFLTCPNELV-LPSWYPSIPCLSNSTSSFFAT 449


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 561 HRKRRLERGGQPTGLKFSLTEEFPKEPHEYH 653
           +RKR     G P   +   T  FP++ HEYH
Sbjct: 291 NRKRDSSSDGGPAYGRSRSTHRFPQDMHEYH 321


>At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 599

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 156 PQNKLX-KKIYGDCVNTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRKIYKFESLCDF 332
           P+ KL  +++  +    A  L+  K K    G++    +   TPLG   K+Y  E +C+ 
Sbjct: 444 PEYKLYMRQVKKNAKALASALISRKCKLITGGTDNHLLLWDLTPLGLTGKVY--EKVCEM 501

Query: 333 QYLPVSK 353
            ++ V+K
Sbjct: 502 CHITVNK 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,311
Number of Sequences: 28952
Number of extensions: 277053
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)