Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G21
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 172 2e-43
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 44 1e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 42 6e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 41 8e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 40 0.002
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 36 0.022
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 36 0.022
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 36 0.022
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 36 0.022
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 36 0.022
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 36 0.029
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 36 0.038
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 34 0.087
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 34 0.087
SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 33 0.15
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 33 0.15
SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 31 1.1
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 31 1.1
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 2.5
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 3.3
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 28 5.7
SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 28 7.6
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 28 7.6
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 28 7.6
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 172 bits (419), Expect = 2e-43
Identities = 85/168 (50%), Positives = 110/168 (65%)
Frame = +3
Query: 138 YFVIFCSVIIFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDG 317
Y ++F +++ S + RGV+++K Y +KDFTC DG+ TIPFS VNDDYCDC DG
Sbjct: 12 YLLLFTTIVSRLGSALTL-RGVAITKLPFYDSSKDFTCLDGSLTIPFSSVNDDYCDCNDG 70
Query: 318 SDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTACTNICEELGK 497
SDEPGT+AC NG FHCTNAG+RP+N PSS VNDG+CDCCDG+DEY C + C+EL K
Sbjct: 71 SDEPGTAACPNGQFHCTNAGYRPKNYPSSRVNDGICDCCDGSDEYDGKVNCPDTCKELYK 130
Query: 498 EARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQLTQLEKDKSEA 641
+ + + EL K + DL + K+ +AE Q KDK EA
Sbjct: 131 QEFEKRRHEIELAK--QKKLEDLRLQLEQKKQVVAE--LQATKDKVEA 174
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSSXVNDGV 422
C DG + ++ D DC DGSDE GT C + F CTN P LP DG
Sbjct: 477 CADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCIP--LPQKC--DGT 532
Query: 423 CDCCDGTDEYANPT 464
+C DG+DE PT
Sbjct: 533 DNCGDGSDEKMCPT 546
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG---TSACINGVFHCTNAGHRPQNLPS 401
P DFTC + +P S+ D DC D SDE G T+ C F C + + + S
Sbjct: 344 PPSDFTCANSQC-VPNSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDG----RCITS 398
Query: 402 SXVNDGVCDCCDGTDE 449
+ D DC D +DE
Sbjct: 399 TFRCDREFDCTDRSDE 414
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE----------PGTSACINGVFHCTNAGHRPQ 389
+FTC IP + D DC DGSDE P C C +
Sbjct: 426 EFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCADGN---G 482
Query: 390 NLPSSXVNDGVCDCCDGTDE 449
+ + DG DC DG+DE
Sbjct: 483 CVHRRWICDGERDCLDGSDE 502
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSACINGVFHCTNAGHRPQNLPS 401
P +FTC +G + + ++ D DC D SDE P T+ C+ G C G + +PS
Sbjct: 2249 PAHEFTCPNGRC-VSYDFLCDGEDDCGDFSDELRCPPTT-CVPGQVKC---GSKNLCIPS 2303
Query: 402 SXVNDGVCDCCDGTDE 449
S + DG DC DG DE
Sbjct: 2304 SWLCDGSDDCGDGWDE 2319
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/71 (43%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSXVND 416
F C GT I + D DC DGSDE C N F CT+ GH N S V D
Sbjct: 2462 FRCKTGTC-ITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTS-GHCIAN---SSVCD 2516
Query: 417 GVCDCCDGTDE 449
G DC DG+DE
Sbjct: 2517 GDTDCADGSDE 2527
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSXVND 416
F C+ IP + D DC DGSDE G C + C + + + +S V D
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASG----RCISASWVCD 3188
Query: 417 GVCDCCDGTDE 449
V DC DG+DE
Sbjct: 3189 HVNDCGDGSDE 3199
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSS 404
P +F C +G I + D DC DGSDE G C +HC + +P S
Sbjct: 89 PKLEFQCANGRC-INKKWRCDGMKDCADGSDESTCGEGTCRPDEWHCIGTS---RCIPLS 144
Query: 405 XVNDGVCDCCDGTDE 449
V DG DC D DE
Sbjct: 145 RVCDGTNDCGDNYDE 159
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCF--DGSDEPGTSACIN---GVFHCTNAGHRPQNLPSS 404
+F C IP S+ D DC D SDE S N +F C N +P++
Sbjct: 871 EFRCQASRKCIPLSWRCDGDYDCLAPDLSDEANCSVATNCSASMFRCANGQCKPRDW--- 927
Query: 405 XVNDGVCDCCDGTDE 449
V DG DC DG+DE
Sbjct: 928 -VCDGFDDCGDGSDE 941
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS----ACINGVFHCTNAGHRPQNLP 398
P C G IP + D DC DGSDE C F C + + +P
Sbjct: 3087 PAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCTAITCSAETFRCYS---DRRCIP 3143
Query: 399 SSXVNDGVCDCCDGTDEYANP 461
+ DG DC DG+DE P
Sbjct: 3144 NQWKCDGESDCNDGSDEKGCP 3164
Score = 37.5 bits (83), Expect = 0.009
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 216 ASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA---CINGV-FHCTNAGHR 383
A L P F C +G IP S V D DC D SDEP + C + F C N
Sbjct: 43 ARLTCPPTKFLCANGMC-IPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANG--- 98
Query: 384 PQNLPSSXVNDGVCDCCDGTDE 449
+ + DG+ DC DG+DE
Sbjct: 99 -RCINKKWRCDGMKDCADGSDE 119
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSXVN 413
+F C + IP +V D DC D SDE + C F C N H Q +
Sbjct: 1051 EFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQR---KWIC 1107
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 1108 DGENDCGDRSDE 1119
Score = 35.9 bits (79), Expect = 0.029
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP----GTSACINGVFHCTNAGHRPQNLP 398
P F C G I S V D DC DGSDE GTS C G+F C+ RP L
Sbjct: 2497 PNHTFKCTSGHC-IANSSVCDGDTDCADGSDEKDCDLGTSTCGAGLFRCS---CRPGYL- 2551
Query: 399 SSXVNDG-VCDCCDGTDEYANPTACTNICEEL 491
++DG C D YA C C L
Sbjct: 2552 --LMSDGRSCQDVDECKSYA-LNGCNQFCINL 2580
Score = 35.5 bits (78), Expect = 0.038
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSXVND 416
+ C G I S+V D DC DGSDE C +G F C + + + D
Sbjct: 3173 YRCASGRC-ISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDG----LCIARAWKCD 3227
Query: 417 GVCDCCDGTDE 449
G+ DC D +DE
Sbjct: 3228 GMMDCADASDE 3238
Score = 34.3 bits (75), Expect = 0.087
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP-----GTSACINGVFHCTNAGHRPQNLPSS 404
+F C G +P S+ D DC D SDEP + C F C N + + +
Sbjct: 2332 EFRCTSGEC-VPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNG----RCISTR 2386
Query: 405 XVNDGVCDCCDGTDE 449
+ DG DC D +DE
Sbjct: 2387 LLCDGDNDCGDNSDE 2401
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 207 LSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP----GTSACINGVFHCTNA 374
LS AS + +F C G + S+V D DC DGSDE + C G F C N
Sbjct: 2163 LSNASC--ASSEFACESGQC-VRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHFSCNNG 2219
Query: 375 GHRPQNLPSSXVNDGVCDCCDGTDEYANP 461
+ + + V D DC D +DE P
Sbjct: 2220 ----RCINAKWVCDRENDCGDNSDEARCP 2244
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN-LPSSXVND 416
+++C + +P ++V D DC DGSDE C T + + D
Sbjct: 2418 EYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNCERATCDVTQFRCKTGTCITREWRCD 2477
Query: 417 GVCDCCDGTDE 449
DC DG+DE
Sbjct: 2478 HQDDCGDGSDE 2488
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 YLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT----SACINGVFHCTNAGHRPQN 392
+ P + + C + + ++ DD DC D SDE S C N F C N +
Sbjct: 3245 WCPQRLYQCINHVC-VDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNN----KC 3299
Query: 393 LPSSXVNDGVCDCCDGTDE 449
+P V DGV C D +DE
Sbjct: 3300 IPKWNVCDGVYHCTDKSDE 3318
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPSSXV 410
DF C D I + D DC DGSDEP + C G + C A +R + + V
Sbjct: 2930 DFMC-DNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQC--ADNR-KCISVLEV 2985
Query: 411 NDGVCDCCDGTDE 449
DG+ C G DE
Sbjct: 2986 CDGIPSCPAGDDE 2998
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA---CINGVFHCTNAGHRPQNLPSSXVN 413
+ C D I V D C G DE + C F C N + + S V
Sbjct: 2971 YQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCDNF----RCVYRSRVC 3026
Query: 414 DGVCDCCDGTDE-YANPTACT 473
DG+ DC DG+DE + T CT
Sbjct: 3027 DGIDDCRDGSDERNCHVTTCT 3047
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG 332
F C +G P +V D + DC DGSDE G
Sbjct: 915 FRCANGQCK-PRDWVCDGFDDCGDGSDEKG 943
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA--CINGVFHCTNAGHRPQNLPSSXVND 416
F+C DG I ++ D DC D SDE G+ C ++ C N H + + D
Sbjct: 3212 FSCDDGLC-IARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCIN--H--VCVDRRWLCD 3266
Query: 417 GVCDCCDGTDE 449
+ DC D +DE
Sbjct: 3267 DMDDCGDYSDE 3277
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPS 401
P+ F C +G IP S+ D DC D SDEP + +C +G F C+N + +
Sbjct: 11 PSNRFRCNNGRC-IPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNG----RCISR 65
Query: 402 SXVNDGVCDCCDGTDE 449
S V D DC DG+DE
Sbjct: 66 SWVCDRDNDCGDGSDE 81
Score = 28.7 bits (61), Expect = 4.3
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDE-----PGT-----------SACINGVFHCTNA 374
F+C +G I S+V D DC DGSDE P T S+C + F C N
Sbjct: 55 FSCSNGRC-ISRSWVCDRDNDCGDGSDERNCSYPTTGPWTTRPWTPISSCRSWEFSCLNG 113
Query: 375 GHRPQNLPSSXVNDGVCDCCDGTDEYA-NPTA 467
+ + V DGV DC D +DE + N TA
Sbjct: 114 ----RCVFYRLVCDGVDDCGDSSDEMSCNATA 141
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSSXVN 413
+F C +G I ++ D DC D SDE G +C N + C+N + + S V
Sbjct: 118 EFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS---RCIAKSQVC 174
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 175 DGRVDCPDASDE 186
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSXVN 413
+F C + IP +V D DC D SDE + C F C N H Q +
Sbjct: 78 EFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQR---KWIC 134
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 135 DGENDCGDRSDE 146
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSXVN 413
+F C +G I ++ DD DC D SDE G S C + F C G + + S +
Sbjct: 8 EFRCNNGRC-ITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQC---GTSRKCIRKSKIC 63
Query: 414 DGVCDCCDGTDE 449
DG DC G DE
Sbjct: 64 DGKSDCSGGEDE 75
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 303 DCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
DC DGSDE G +C + F C N + + S V D DC DG+DE
Sbjct: 105 DCRDGSDETGCGSCSSSQFRCRNG----RCVSRSWVCDKDNDCGDGSDE 149
Score = 39.1 bits (87), Expect = 0.003
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Frame = +3
Query: 234 TKDFTCFDGTATIPFSYVNDDYCDCFDGSDE-----PGTSACINGVFHCTNAGHRPQNLP 398
+ F C +G + S+V D DC DGSDE G C G + C N + +P
Sbjct: 120 SSQFRCRNGRC-VSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDN----DRCIP 174
Query: 399 SSXVNDGVCDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLXIDLIQKG 578
+ V D DC DG+DE T C + GK ++ + +K S+ D++ +
Sbjct: 175 RNWVCDRDNDCGDGSDE----TGCRGV---YGKRT---LKKKDDQNKQDSKQLDDILDES 224
Query: 579 NXKRNEMAEQLTQLEKDKSEAXK 647
K+ E + + + S A K
Sbjct: 225 TVKKVESEDMAQPVNDENSAAAK 247
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGV 422
FTC +G S N C DGSDE G + C F C++ + + + DG
Sbjct: 664 FTCNNGECVTKTSRCNGMRDSCVDGSDESGCT-CGLHEFQCSSG----ECIEVATFCDGK 718
Query: 423 CDCCDGTDE--YANPTACTNICEELGKEARAEAQ 518
DC DG DE + + +CE G+++ AE+Q
Sbjct: 719 KDCGDGFDETHCGSCPVSSVVCETQGRDS-AESQ 751
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 279 EFQCTSGHCISGSSRCDSDY-NCMDSSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 332
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 333 VKDCEQGLDE 342
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C DG P + N + DC DGSDE + C + + S +G
Sbjct: 78 EFKCPDGKCVHPSKFCNGE-SDCTDGSDEWSCDNSCSSRHACADG----TCVTWSLTCNG 132
Query: 420 VCDCCDGTDE 449
V DC DG+DE
Sbjct: 133 VSDCQDGSDE 142
Score = 35.1 bits (77), Expect = 0.050
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGV 422
F C +G + DY C D SDE AC + F C + G PS N G
Sbjct: 43 FQCLNGMCVGQEVRCDGDYA-CVDHSDERNC-ACRSAEFKCPD-GKCVH--PSKFCN-GE 96
Query: 423 CDCCDGTDEYANPTACTN 476
DC DG+DE++ +C++
Sbjct: 97 SDCTDGSDEWSCDNSCSS 114
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP 329
C DGT + +S + DC DGSDEP
Sbjct: 118 CADGTC-VTWSLTCNGVSDCQDGSDEP 143
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 36.3 bits (80), Expect = 0.022
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN---LPSSXVN 413
F C +G I +YV D DC DGSDE S +NG + C +R N +P + V
Sbjct: 5 FRCRNGNC-INRNYVCDKDNDCGDGSDEVACSR-LNGGW-CGAGQYRCDNDRCIPLNWVC 61
Query: 414 DGVCDCCDGTDE 449
D + DC D +DE
Sbjct: 62 DRLNDCHDNSDE 73
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C DG P + N + DC DGSDE + C + + S +G
Sbjct: 78 EFKCPDGKCVHPSKFCNGE-SDCTDGSDEWSCDNSCSSRHACADG----TCVTWSLTCNG 132
Query: 420 VCDCCDGTDE 449
V DC DG+DE
Sbjct: 133 VSDCQDGSDE 142
Score = 35.1 bits (77), Expect = 0.050
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGV 422
F C +G + DY C D SDE AC + F C + G PS N G
Sbjct: 43 FQCLNGMCVGQELRCDGDYA-CVDHSDERNC-ACRSAEFKCPD-GKCVH--PSKFCN-GE 96
Query: 423 CDCCDGTDEYANPTACTN 476
DC DG+DE++ +C++
Sbjct: 97 SDCTDGSDEWSCDNSCSS 114
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP 329
C DGT + +S + DC DGSDEP
Sbjct: 118 CADGTC-VTWSLTCNGVSDCQDGSDEP 143
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGV 422
F C +G + ++ D DC DG+DE G C + F C N +N V D
Sbjct: 102 FKCNNGHC-VHRNWKCDGSNDCRDGTDEVGCGKCGSTQFRCRNGNCINRN----YVCDKD 156
Query: 423 CDCCDGTDEYA 455
DC DG+DE A
Sbjct: 157 NDCGDGSDEVA 167
Score = 36.3 bits (80), Expect = 0.022
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN---LPSSXVN 413
F C +G I +YV D DC DGSDE S +NG + C +R N +P + V
Sbjct: 139 FRCRNGNC-INRNYVCDKDNDCGDGSDEVACSR-LNGGW-CGAGQYRCDNDRCIPLNWVC 195
Query: 414 DGVCDCCDGTDE 449
D + DC D +DE
Sbjct: 196 DRLNDCHDNSDE 207
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 1108 EFQCASGHCISGSSRCDSDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 1161
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 1162 VKDCEHGLDE 1171
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 198 EFQCASGHCISGSSRCDSDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 251
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 252 VKDCEHGLDE 261
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 36.3 bits (80), Expect = 0.022
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSACINGVFHCTNAGHRPQNLPSSXV 410
+FTC + I ++ D DC D SDE P + + F CTN + +P V
Sbjct: 590 EFTCVNTQKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNG----RCIPRRWV 645
Query: 411 NDGVCDCCDGTDEYANPTACTNICEE 488
D DC DG+DE + T C E
Sbjct: 646 CDKDDDCHDGSDE--RNSCATMTCSE 669
Score = 35.9 bits (79), Expect = 0.029
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSA-CINGVFHCTNAGHRPQNLPSSX 407
+FTC D + + D DC D SDE P +S C + + C+ + + S
Sbjct: 710 EFTCADKRCILSRWRCDGDR-DCADNSDEINCPNSSQYCKSSEYQCSTG----ECIHKSW 764
Query: 408 VNDGVCDCCDGTDEYANPTACTNICEE 488
V DG DC + +DE PT +IC++
Sbjct: 765 VCDGEFDCLNKSDENNCPTKPPSICKD 791
Score = 35.1 bits (77), Expect = 0.050
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP---GTSACINGVFHCTNAGHRPQNLPS 401
P F C +G IP +V D DC DGSDE T C C N +
Sbjct: 628 PDTQFRCTNGRC-IPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNG----ICVVK 682
Query: 402 SXVNDGVCDCCDGTDE 449
V D DC DGTDE
Sbjct: 683 RWVCDQDDDCGDGTDE 698
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHC------TNAGHRPQN 392
+F C IP S V D DC + +DEP + C + C T G+
Sbjct: 793 EFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPCQHYCNDTKTGYFCSC 852
Query: 393 LPSSXVNDGVCDCCDGTDEYANPTACTNIC 482
P V C DE A P +C+ +C
Sbjct: 853 RPGYKVALDDPKSCRDVDECAIPGSCSQMC 882
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 234 TKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSX 407
++ F C IP S+ D DC D SDE G C + F+C N Q +P S
Sbjct: 92 SRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCNN-----QCVPLSW 146
Query: 408 VNDGVCDCCDG 440
DG DC G
Sbjct: 147 KCDGEKDCRPG 157
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.9 bits (79), Expect = 0.029
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG-------TSACINGVFHCTNAGHRPQ 389
P +F C + +P +++ D DC DGSDE T C F C N+
Sbjct: 22 PRHEFEC-ENKLCVPRTWLCDGDNDCHDGSDEKNCESRRMRTVKCGIEEFDCGNS----T 76
Query: 390 NLPSSXVNDGVCDCCDGTDEYANPTAC 470
+P + + DG+ DC D +DE C
Sbjct: 77 CIPLTVLCDGLYDCADRSDESKKCEEC 103
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C +G Y + D+ C DGSDE C + +F C + + + + + DG
Sbjct: 95 EFQCDNGKCIRKNLYCDGDFA-CVDGSDETRCE-CPSNMFLCPSG----ECIMGTQLCDG 148
Query: 420 VCDCCDGTDE--YANPTAC 470
DC D TDE A+ T C
Sbjct: 149 KKDCTDNTDEKNCAHKTEC 167
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 34.3 bits (75), Expect = 0.087
Identities = 25/79 (31%), Positives = 33/79 (41%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDG 419
+F C G S + DY +C D SDE G C C++ + + S + DG
Sbjct: 213 EFQCTSGHCISGSSRCDGDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVQSINLCDG 266
Query: 420 VCDCCDGTDEYANPTACTN 476
V DC G DE C N
Sbjct: 267 VRDCEYGLDELRCGDGCKN 285
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 34.3 bits (75), Expect = 0.087
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 291 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
D Y +C DGSDE G + C F C N G + + + D + DC D +DE
Sbjct: 1366 DKYKNCTDGSDELGCATCEPNFFRC-NTG---KCISARWQCDQLDDCGDNSDE 1414
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/69 (31%), Positives = 26/69 (37%)
Frame = +3
Query: 270 IPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
IP + D DC D SDE C F C N Q + D +C DG+DE
Sbjct: 1322 IPKMWRCDGMLDCTDKSDEEDCPPCKENQFRCDNG----QCIDGDPRCDKYKNCTDGSDE 1377
Query: 450 YANPTACTN 476
T N
Sbjct: 1378 LGCATCEPN 1386
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACING 353
FTC +G +P +++ D DC D DE A I G
Sbjct: 952 FTCDNGAKCLPLTWLCDSITDCMDSKDEHNCPATIPG 988
Score = 33.5 bits (73), Expect = 0.15
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--------ACINGVFHCTNAGHRPQNLP 398
F C + S + D DC DGSDE C + F C N + LP
Sbjct: 906 FACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGA---KCLP 962
Query: 399 SSXVNDGVCDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLXIDLIQKG 578
+ + D + DC D DE+ P + L + A+ A A+ K + ++++K
Sbjct: 963 LTWLCDSITDCMDSKDEHNCPATIPG--KTLARAAQDAAVTAAQEAKRAALAADNMMKKA 1020
Query: 579 NXKRNEMAEQLTQLEKDKS 635
+ + E ++S
Sbjct: 1021 QEAVEKAKRAMAIAEANES 1039
>SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 486
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA-CIN--GVFHCT-NAGHRPQNLPSSXV 410
FTC + D +C DGS A C N G F C AGH +
Sbjct: 387 FTCACNVGYTGDGHTCQDINECADGSHTCSYKATCTNTVGSFTCACKAGHTGDGHTCQDI 446
Query: 411 NDGVCDCCDGTDEYANPTACTN 476
N+ C DG+ +N CTN
Sbjct: 447 NE----CADGSHTCSNKATCTN 464
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 315 GSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
G D C+ G F C + G + +P S V DG DC DG DE
Sbjct: 202 GYDPVTPPPCMPGEFKCQSTG---RCIPESKVCDGTRDCQDGEDE 243
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP 329
+F C IP S V D DC DG DEP
Sbjct: 215 EFKCQSTGRCIPESKVCDGTRDCQDGEDEP 244
>SB_4396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 480 CEELGKEARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQLTQLEKDKSEA 641
C EL ++ E Q+ AEL QL L Q+ + E+AE LT ++ E+
Sbjct: 245 CNELEQQLEQERQQKAELEMRTEQLSTQL-QENEDRVAELAESLTVAQRSLDES 297
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 342 CINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTACTN 476
C C N+GH Q V D DC DGTDE +PT C +
Sbjct: 120 CTANEVRCKNSGHCVQQ---QQVCDFTDDCGDGTDE--DPTLCAS 159
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 FDGSDEPGT-SACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTACT 473
FD +P S+C + F C ++GH + SS D DCCDG++E N T CT
Sbjct: 2771 FDNCFQPDPPSSCSSNQFRC-DSGHC---ISSSSKCDFETDCCDGSEE-RNST-CT 2820
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 SDEPGTSA---CINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTACT 473
S P T+A C F C G + +P + V D DC DG+DE + P+ CT
Sbjct: 3414 SPPPTTAAPNNCNAQQFGCVTDG---KCIPLTSVCDFNVDCLDGSDERSCPSNCT 3465
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 318 SDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
S P C G F CT+ L ++ D V DC DG DE
Sbjct: 2990 SPSPTPGICGAGKFQCTDLTGNKVCLANTKKCDFVPDCSDGIDE 3033
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 237 KDFTCFDGTATIPFSYVNDDYCDCFDGSDE 326
+ F C IP + V D DC DGSDE
Sbjct: 3428 QQFGCVTDGKCIPLTSVCDFNVDCLDGSDE 3457
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 148 YFVPSSYLPSPMCLDPAVYL-CLKHLSIYRQKILLVLMELLQYLSATLMTTTV 303
Y+VPSS LPSP L P+ L L L ++ L LQ +TTT+
Sbjct: 493 YYVPSSLLPSPPLLRPSNLLPSLPSLRPFKLAPFSPLTTALQACYLLFLTTTL 545
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +3
Query: 303 DCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDE 449
DC D SDE S C F C G +P S DG DC GTDE
Sbjct: 47 DCADSSDEINCTKRSMCRVDQFECLIEG---DCIPLSKHCDGTWDCQHGTDE 95
>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 842
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = -2
Query: 605 FCHFISLXISFLYEVYXQLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFICSITAI 426
FC F IS L L A Y L + ++ LFT++ T I + +
Sbjct: 95 FCQFYGFYISCLVSASLLLMAFTAINRYFLVVRTNYYRRLFTSMRTRFLICGALVLACIV 154
Query: 425 TDSVINXGTRQILRPVSGIC 366
S + G + + P G C
Sbjct: 155 PISYLASGEKYLFNPGKGFC 174
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGT--SACINGVFHCTNAGHRPQNLPSSXVND 416
F C +G IP S+ D DC D SDE S C F C N + + S D
Sbjct: 193 FKCGNGKC-IPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNG----RCISSKWRCD 247
Query: 417 GVCDCCDGTDE 449
DC D +DE
Sbjct: 248 HDNDCGDMSDE 258
>SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACI 347
D C D ATIPF DD + + +PGT +
Sbjct: 187 DGWCRDQEATIPFPSYEDDILSLVETTLQPGTKLAV 222
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 431 AITDSVINXGTRQILRPVSGICTMENTVYTSRCTG 327
AITD ++ G + I R ++G+ +NTV S+ G
Sbjct: 545 AITDGLVEGGKKYINRYLTGLKNAKNTVKLSKIGG 579
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 300 CDCFDGSDEPGTSACI 347
CDC +GS +P T AC+
Sbjct: 507 CDCINGSCDPVTGACV 522
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 423 CDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAG 545
C CCDG +N C C++L +E R + +L AG
Sbjct: 108 CSCCDGFCGTSNGCNCPP-CQKLDQEEREMKEEEQQLPVAG 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,521
Number of Sequences: 59808
Number of extensions: 354560
Number of successful extensions: 1271
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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