Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G20
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)                 98   6e-21
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   1.9  

>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
          Length = 304

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 48/69 (69%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
 Frame = +1

Query: 424 GVFIXRGKXXALVTKNLVPXSXVYGEXXISLDN--ERDKVEYXVWNPFXSKLAAAIMGGV 597
           GVFI RGK  ALVTKNLVP   VYGE  IS+D   E +K+EY VWNPF SKLAAAI+GGV
Sbjct: 83  GVFIARGKEDALVTKNLVPGETVYGEKKISVDGVAEGEKIEYRVWNPFRSKLAAAILGGV 142

Query: 598 DAIHMAPXS 624
           D IHM P S
Sbjct: 143 DKIHMPPGS 151


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 585  YGWSGCYTHG 614
            YGW+ C THG
Sbjct: 2165 YGWNNCCTHG 2174



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 2/13 (15%)
 Frame = +3

Query: 579  CN--YGWSGCYTH 611
            CN  Y W+ CYTH
Sbjct: 2131 CNNKYRWNNCYTH 2143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,800
Number of Sequences: 59808
Number of extensions: 120263
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)