Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G20
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...   103   7e-23
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...   102   2e-22
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    86   2e-17

>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score =  103 bits (248), Expect = 7e-23
 Identities = 51/76 (67%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = +1

Query: 394 QVIIEPHRHPGVFIXRGKXXALVTKNLVPXSXVYGEXXISLDNE-RDKVEYXVWNPFXSK 570
           +VI+EPHRH GVFI +GK  ALVTKNLVP   VY E  IS+ NE   KVEY VWNPF SK
Sbjct: 68  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSK 127

Query: 571 LAAAIMGGVDAIHMAP 618
           LAAAI+GGVD I + P
Sbjct: 128 LAAAILGGVDNIWIKP 143


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/76 (65%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +1

Query: 394 QVIIEPHRHPGVFIXRGKXXALVTKNLVPXSXVYGEXXISLDNE-RDKVEYXVWNPFXSK 570
           +VI+EPHRH GVFI +GK  ALVTKNLVP   VY E  IS+ NE   K EY VWNPF SK
Sbjct: 79  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSK 138

Query: 571 LAAAIMGGVDAIHMAP 618
           LAAAI+GGVD I + P
Sbjct: 139 LAAAILGGVDNIWIKP 154


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
 Frame = +1

Query: 394 QVIIEPHRHPGVFIXRGKXXALVTKNLVPXSXVYGEXXISLDNE-RDKVEYXVWNPFXSK 570
           +V++ PHRH GVF+ + K  ALVTKNLVP   +Y E  I + NE R  VEY VWNP  SK
Sbjct: 58  KVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRSK 117

Query: 571 LAAAIMGGVDAIHMAP 618
           LA AI  GVD I + P
Sbjct: 118 LADAITTGVDNIWIKP 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,587,572
Number of Sequences: 28952
Number of extensions: 86056
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)