Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G16
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   4e-41
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            32   0.39 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.6  
SB_38216| Best HMM Match : APOBEC_C (HMM E-Value=7.3)                  29   2.1  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      29   2.8  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 29   3.7  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_48702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   6.4  
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  164 bits (399), Expect = 4e-41
 Identities = 78/95 (82%), Positives = 87/95 (91%), Gaps = 2/95 (2%)
 Frame = +2

Query: 266 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 439
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 440 HKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 544
           HKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 265 SQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 384
           S C  A  GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 200 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 301
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_38216| Best HMM Match : APOBEC_C (HMM E-Value=7.3)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 62  LKSCLSRPEFNKQHGEPYKIWNKYH-DQKRLQ 154
           L SC   P   K+H + +  W K H D K+L+
Sbjct: 199 LPSCNENPVMKKRHSKSFSFWKKNHRDNKQLK 230


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -2

Query: 565 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 425
           FY  L L V D    L  G+D    DLF + R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 178 GSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALAREGL 294
           GSR   R RHR  PGR  P  P    S+ ++ A AR GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139  PKTSSANDVIVKRGSRCSVRQR-HRETPGRGLPYPPHQ 249
            P   SA    V   ++C  R R H++   R LP+PP Q
Sbjct: 1173 PPRQSAMRATVATKTKCGARYRSHQDRVRRALPWPPRQ 1210



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 130  IS*PKTSSANDVIVKRGSRCSVRQR-HRETPGRGLPYPPHQDHSYFSQCALAREGLC*PN 306
            +S P   SA    V   ++C+ R   H+    R LP+PP Q     ++  +A +  C   
Sbjct: 1341 LSWPPGQSAARATVATETKCAARYHGHQYKVRRALPWPPRQS---AARATMATKTKCDER 1397

Query: 307  QWSQETEAACKGPSP 351
               Q+ +  C   SP
Sbjct: 1398 YRGQQDKVRCALSSP 1412


>SB_48702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 167 ITSLAEDVFGHDICSKFYTALHVAC*IPAEINNFSIKNCSALN 39
           +  LA  V     CSK  TALHVA    + +NN + K C AL+
Sbjct: 103 VALLAHGVAVDAACSKGCTALHVAAEFLSFLNN-TAKECLALS 144


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 235 YPPHQDHSYFSQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 384
           Y P   +SY + CA  +   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 340  GPSPHANQDPAYHHP 384
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 62  LKSCLSRPEFNKQHGEPYKIWNKYHDQKRLQPMM 163
           L++   RPEF + H +P + W +   Q    P M
Sbjct: 563 LENSFERPEFRRSHSQPGQFWQQAGAQFPSHPGM 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,514
Number of Sequences: 59808
Number of extensions: 396779
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)