Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G14
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24820.1 68416.m03114 BSD domain-containing protein contains ...    29   2.0  
At2g25510.1 68415.m03054 expressed protein                             29   3.5  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    27   8.0  

>At3g24820.1 68416.m03114 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 186

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 222 RTFLTQLKESNDGIXFENDSQLLQDGIK--LLVQPENLKKVNVFEXNEXRNLSI 377
           R+FL + KES+DG   +N S + ++G    L V  E +  V  F  +  +N S+
Sbjct: 9   RSFLREKKESSDGNSLKNGSSVKEEGKDEILGVTDELIDHVRSFTIDTFKNFSL 62


>At2g25510.1 68415.m03054 expressed protein
          Length = 103

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 636 CECSCEVHH*MVQFFCVCVEFHQ-TLFYMQS 547
           C C+C +H  +V  FC+C+  H   +FY  S
Sbjct: 67  CVCACFLHCGLVCGFCLCLPMHVFVIFYSLS 97


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 600 QFFCVCVEFHQTLFYMQSAXYLXCSRCSLIL 508
           +  C  VEFH+ L+Y++S  +L     S IL
Sbjct: 256 KLICAFVEFHRKLWYLKSYSFLNVLALSKIL 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,679
Number of Sequences: 28952
Number of extensions: 213323
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)