Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G12
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    61   2e-10
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    61   2e-10
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    35   0.014
At3g25950.1 68416.m03234 hypothetical protein                          30   0.53 
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   2.8  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    27   3.8  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    26   6.6  
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ...    26   6.6  
At1g72010.1 68414.m08324 TCP family transcription factor, putati...    26   8.7  
At1g18380.1 68414.m02296 expressed protein                             26   8.7  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +1

Query: 46  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T G   K  +  +
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 66



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  KTAKLTEMVSKSQGRPGTNPPLAMDPKFLRNQRFCKKGNLK 205
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 34  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T G   K  +  +
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 44



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  KTAKLTEMVSKSQGRPGTNPPLAMDPKFLRNQRFCKKGNLK 205
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 12  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 61  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGH 153
           KNHT H++ R ++  G K  RKT   +T GH
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 162 FGSMAKGGFVPGLPWLFDTISVSFAVLVMICMIL 61
           +GS A  G VP   WL   + + FA+LV I  +L
Sbjct: 201 YGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 109 YHFCELCGFGYDLYDSLTLPF*CVFNP 29
           ++ C +CGF  DL  +LTLP   + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208


>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 426

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 109 YHFCELCGFGYDLYDSLTLPF*CVFNPLRF 20
           +H  E+CG G+DLY S  +   C+    RF
Sbjct: 33  FHHMEVCGIGHDLY-SYNIVINCLCRCSRF 61


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 109 YHFCELCGFGYDLYDSLTLP 50
           YH CE CGF  DLY ++  P
Sbjct: 65  YH-CETCGFDVDLYCAMYPP 83


>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 451

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 37  KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEASQA 216
           K++K  +  NH +HNQN +  RN         + +  GHG  I   ++ +Q   P   QA
Sbjct: 307 KQVKQHQH-NHNSHNQNSRYQRND-----NNGYGAPGGHGHFIAGNNQAVQAFNPAIGQA 360


>At1g72010.1 68414.m08324 TCP family transcription factor, putative
           PCF2 (GP:2580440) [Oryza sativa]
          Length = 375

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 52  AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKI 165
           A S   T+        ++ +KKP K RH    G G +I
Sbjct: 40  ATSSTSTSSGSALAVVKSAVKKPTKDRHTKVDGRGRRI 77


>At1g18380.1 68414.m02296 expressed protein
          Length = 250

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 91  CGFGYDLYDSLTLPF*CVFNPLRFRG 14
           CG G+ +++S T PF   FN  +F G
Sbjct: 38  CGSGHRVFESTTYPFWGGFNKPKFCG 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,229,488
Number of Sequences: 28952
Number of extensions: 112481
Number of successful extensions: 395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)