Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G10
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   2e-12
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        35   0.033
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     27   6.6  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
 Frame = +3

Query: 150 LTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-----GVGAAPAAGWSA 314
           +T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI + G+      V AAPAAG  A
Sbjct: 23  ITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLILSAGAPGAGGAVAAAPAAGGEA 82



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 82  MVSKAELACVYSALIL 129
           M S +ELACVYSALIL
Sbjct: 1   MASTSELACVYSALIL 16



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 388 SDDDMGFGLFD 420
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.1 bits (77), Expect = 0.033
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 263 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGN 165
           DQ+  I+ F+  G++ WP +  + S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 388 SDDDMGFGLFD 420
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 259 RSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVSGNIIIQPG*EQSK 110
           +S   +PSK   N+PG+   T  +A F +     P++    I  G +Q++
Sbjct: 587 KSAECLPSKGKNNKPGKGKKTDMSAWFNLFSDLDPLANPDAIGQGKKQTE 636


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,902,264
Number of Sequences: 59808
Number of extensions: 216361
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)