Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G10
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    63   1e-10
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    63   1e-10
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       62   2e-10
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    61   4e-10
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    61   4e-10
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     55   2e-08
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    31   0.44 
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    30   0.76 
At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVG-------AAPAA 302
           + +T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G G       AAPAA
Sbjct: 21  IAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80

Query: 303 GWSA 314
           G  A
Sbjct: 81  GGGA 84


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVG-------AAPAA 302
           + +T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G G       AAPAA
Sbjct: 21  IAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80

Query: 303 GWSA 314
           G  A
Sbjct: 81  GGGA 84


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVG-------AAPAA 302
           + +T +KI+T++KAA V +E YWP LFAK  E  NV DLI N+G+G G       AAPAA
Sbjct: 21  IAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAA 80

Query: 303 GWSA 314
           G  A
Sbjct: 81  GGGA 84


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPA 299
           + +T +KI+T++KAA V++E YWP LFAK  E  NV DLI N+G+G G   A
Sbjct: 21  IAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGA 72


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPA 299
           + +T +KI+T++KAA V++E YWP LFAK  E  NV DLI N+G+G G   A
Sbjct: 21  IAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGA 72


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
           + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI N+G+G
Sbjct: 20  IEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGAG 65


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 110 FTLLSSWLDDDVAANW*ENFHHLESGGCRCR 202
           FT +S  +D D+       FHH ++G C C+
Sbjct: 817 FTYMSRIIDHDIILRDSSRFHHFKNGSCSCK 847


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase
            family protein similar to X4 protein GI:21386798, Y4
            protein GI:21386800 from  [Silene dioica]; contains Pfam
            profiles PF00300: phosphoglycerate mutase family,
            PF01535: PPR repeat
          Length = 1053

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 68   VQN*KWCQKLN*HVFTLLSSWLDDDVAANW*ENFHHLESGGCRC 199
            V+N + C   + +V  L+S  +D +      + FHH + GGC C
Sbjct: 1007 VKNLRVCSDCH-NVIKLISKIVDREFVVRDAKRFHHFKDGGCSC 1049


>At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 719

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 95  LN*HVFT-LLSSWLDDDVAANW*ENFHHLESGGCRC 199
           +N H  T L+S  +D ++       FHH + G C C
Sbjct: 655 VNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSC 690


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,795
Number of Sequences: 28952
Number of extensions: 162110
Number of successful extensions: 424
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)