Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G09
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 124 7e-29
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 124 7e-29
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 123 9e-29
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 123 9e-29
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 38 0.006
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 38 0.008
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 34 0.096
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 32 0.39
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 31 0.89
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.6
At3g45380.1 68416.m04899 hypothetical protein contains Pfam prof... 29 2.1
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.1
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.1
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.6
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 28 6.3
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 28 6.3
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 28 6.3
At1g48980.1 68414.m05491 hypothetical protein 23 7.5
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.3
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.3
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.3
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.3
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 27 8.3
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 124 bits (298), Expect = 7e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
L QNV +S+NFLVSLLKK+WQNV
Sbjct: 178 LFQNVQMSVNFLVSLLKKNWQNV 200
Score = 116 bits (280), Expect = 1e-26
Identities = 56/112 (50%), Positives = 72/112 (64%)
Frame = +1
Query: 94 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 273
+ + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH
Sbjct: 13 ITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQH 72
Query: 274 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
+EA+ + + M SES+IKQIPR +G
Sbjct: 73 VEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLG 124
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 124 bits (298), Expect = 7e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
L QNV +S+NFLVSLLKK+WQNV
Sbjct: 178 LFQNVQMSVNFLVSLLKKNWQNV 200
Score = 116 bits (280), Expect = 1e-26
Identities = 56/112 (50%), Positives = 72/112 (64%)
Frame = +1
Query: 94 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 273
+ + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH
Sbjct: 13 ITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQH 72
Query: 274 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
+EA+ + + M SES+IKQIPR +G
Sbjct: 73 VEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLG 124
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 123 bits (297), Expect = 9e-29
Identities = 54/83 (65%), Positives = 69/83 (83%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 119 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 178
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
+ QNV +S+NFLVSLLKK+WQNV
Sbjct: 179 IFQNVQMSVNFLVSLLKKNWQNV 201
Score = 111 bits (266), Expect = 5e-25
Identities = 53/113 (46%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Frame = +1
Query: 94 VNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 270
+++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRPKM++C+LGD Q
Sbjct: 13 ISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQ 72
Query: 271 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
H +EA+ + + M SES+IKQIPR +G
Sbjct: 73 HVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLG 125
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 123 bits (297), Expect = 9e-29
Identities = 54/83 (65%), Positives = 69/83 (83%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 177
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
+ QNV +S+NFLVSLLKK+WQNV
Sbjct: 178 IFQNVQMSVNFLVSLLKKNWQNV 200
Score = 115 bits (276), Expect = 3e-26
Identities = 55/112 (49%), Positives = 71/112 (63%)
Frame = +1
Query: 94 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 273
+ + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM++C+LGD QH
Sbjct: 13 ITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQH 72
Query: 274 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
+EA+ + + M SES+IKQIPR +G
Sbjct: 73 VEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLG 124
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 416 PXLLGPGLNKAGKFPGLLS-HQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 592
P ++G + K P L + H+I++ G+ F ++ C + VG + M E+
Sbjct: 162 PRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEI 221
Query: 593 AQNVHLSINFLVSLLKKHWQNV 658
+NV ++N LV L W V
Sbjct: 222 TENVMATLNGLVEFLPNKWTYV 243
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 416 PXLLGPGLNKAGKFPGLLSHQE-SMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 592
P L+G ++ K P + + + +I++ G F M+ C ++ V + M D++
Sbjct: 142 PKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSMESDDI 201
Query: 593 AQNVHLSINFLVSLLKKHWQNV 658
+NV ++N +V +L W+ +
Sbjct: 202 VENVTATLNGVVDVLPSRWKYI 223
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 33.9 bits (74), Expect = 0.096
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 416 PXLLGPGLNKAGKFPGLLSHQE-SMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 592
P LLG K K P ++ + S +I++ + F + C V V + M +E+
Sbjct: 153 PKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSMGRNEI 212
Query: 593 AQNVHLSINFLVSLLKKHWQNV 658
A+NV ++N + L+ W+NV
Sbjct: 213 AENVVAAMNGIGDLVPGRWKNV 234
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 55 CRLKCLVTRSTSCVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 234
C + ++R + V+ Q + L V + G+K DP+ +KRF KL++
Sbjct: 157 CLIIFRLSRDSRIVDLKYQFTLLTAHIMLRLVSGKRGVKKSDPESEKRFLDDFKLRFFSS 216
Query: 235 PKMQVC 252
M VC
Sbjct: 217 MSMNVC 222
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 30.7 bits (66), Expect = 0.89
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 106 LQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVCVLGDQQH 273
LQS ++K R +E + D + K+ + +K + PK +VCV D +
Sbjct: 297 LQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVCVPIDPNN 356
Query: 274 CDEAKTLNVPCM 309
CDE L VP +
Sbjct: 357 CDEFDPLAVPTL 368
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 590 LAQNVHLSINFLVSLLKKH 646
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45380.1 68416.m04899 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 690
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 107 RTAFTQLVERVTRHFRRHFVCQRTTYHNAWXVV 9
R TQ +E + R F+ VC+ + AW VV
Sbjct: 220 RCQVTQTIELIERKFKEEAVCEDSLLEEAWFVV 252
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 590 LAQNVHLSINFLVSLLKKH 646
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 590 LAQNVHLSINFLVSLLKKH 646
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 239 FGRGMYFSFTVPEKRLSFC 183
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 437 LNKAGKFPGLL--SHQESMTHKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 607
LN G P S + +T + + K G KF+M K L V +G + + + L +NV
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358
Query: 608 LSINFLV 628
+N L+
Sbjct: 359 AFMNALL 365
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 88 SCVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 198
S N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 242 SIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 476 QESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 613
+E+++HK E++ T+K +++ + H++ +EL Q V L+
Sbjct: 663 KEALSHKHSELEATLKKSQEELDAKKSVIVHLESKLNELEQKVKLA 708
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 23.4 bits (48), Expect(2) = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 604 HILSKLIRSHVHMANCYRKTQHLLHLELNGSL 509
H LS+ R+H+ N RK + ++NG L
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL 97
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 643 FLEQ*HKEVDGKMHILSKLIRS 578
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 WPTATERHNTFFIWN-LMVPLTSSILC 490
WPT T R + F W+ + V ++ S LC
Sbjct: 284 WPTTTSRRSLLFTWSCVFVVVSKSRLC 310
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 WPTATERHNTFFIWN-LMVPLTSSILC 490
WPT T R + F W+ + V ++ S LC
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 WPTATERHNTFFIWN-LMVPLTSSILC 490
WPT T R + F W+ + V ++ S LC
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 WPTATERHNTFFIWN-LMVPLTSSILC 490
WPT T R + F W+ + V ++ S LC
Sbjct: 436 WPTTTSRRSLLFTWSCVFVVVSKSRLC 462
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 567 WPTATERHNTFFIWN-LMVPLTSSILC 490
WPT T R + F W+ + V ++ S LC
Sbjct: 360 WPTTTSRRSLLFTWSCVFVVVSKSRLC 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,173
Number of Sequences: 28952
Number of extensions: 294556
Number of successful extensions: 742
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -