Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G07
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 311 4e-85
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.1
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28) 30 1.9
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 2.6
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 3.4
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.5
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 29 4.5
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.5
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044) 28 7.8
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017) 28 7.8
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 311 bits (763), Expect = 4e-85
Identities = 142/187 (75%), Positives = 162/187 (86%)
Frame = +3
Query: 84 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVL 263
MSGGLD+L L EEDV K LAA HLGA N +F ME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 264 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 443
AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 444 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAR 623
LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+A PCN K HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180
Query: 624 EVLRLXG 644
EVLR+ G
Sbjct: 181 EVLRMRG 187
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 33.1 bits (72), Expect = 0.21
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = +2
Query: 257 CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGAFHTRCFY*PDS 421
CS C R CV I L + C C + H A C H+ C S
Sbjct: 822 CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874
Query: 422 SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCY 565
SCI S+ DCI C+ PS F C+ +C T++C +C+
Sbjct: 875 SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCH 920
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 456 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 551
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 530 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 366
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)
Length = 241
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Frame = +2
Query: 272 CCRSHREPR*CVRHLITALRSACCTEVCRAH-RCYAYCGAFHTRCFY*PDSSCIP*TSSL 448
CC R C+ H L CC VC A C C A H C CI S
Sbjct: 16 CCCGSALKRNCLVHSDCGLAKKCCENVCLARLSCDGSCSA-HMDCDQDYGEECI--KSRC 72
Query: 449 DCI-GPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYXMQHQVFPL 592
C+ PC C DC K C + + + FP+
Sbjct: 73 RCVREPCITERGD--KQECDRDADC-----AANKTCINSFCQTRKTFPV 114
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 283 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRGVSHQVLLLTRFKLHSVNL 441
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 437 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 562
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 530 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 372
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 588 HSIGLMWWLLAREVLRLXGVLP 653
H G +WW+L E LR VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 530 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 372
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +2
Query: 251 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCG 385
+TC C+ C C +L+ C + AHRC CG
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCG 633
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 646 TPXSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 524
T SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
Length = 899
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 314 DDEHISGVLDGYDSTSSQNK 255
++EHI+ VLDGYD S +K
Sbjct: 60 NEEHIAFVLDGYDELPSSSK 79
>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
Length = 1243
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 314 DDEHISGVLDGYDSTSSQNK 255
++EHI+ VLDGYD S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,425,858
Number of Sequences: 59808
Number of extensions: 537949
Number of successful extensions: 1256
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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