Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G07
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   244   5e-65
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   237   4e-63
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   237   4e-63
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.30 
At2g22340.1 68415.m02651 hypothetical protein                          31   0.52 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.6  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   4.8  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   4.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  244 bits (596), Expect = 5e-65
 Identities = 111/182 (60%), Positives = 136/182 (74%)
 Frame = +3

Query: 105 LALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 284
           L+  E DV  M AA  HLG +N N+ ME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 285 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 464
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 465 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREVLRLXG 644
             DHQPI E +  NIP+IA C+TDSP+RFVDI  P N K  HSIG ++WLLAR VL++ G
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 645 VL 650
            +
Sbjct: 192 TI 193


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  237 bits (581), Expect = 4e-63
 Identities = 107/178 (60%), Positives = 133/178 (74%)
 Frame = +3

Query: 117 EEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 296
           E D+  ML+A  HLG +N N+ ME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 297 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 476
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 477 QPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREVLRLXGVL 650
           QPI E +  NIP IA C+TDSP+ FVDI  P N K  HSIG ++WLLAR VL++ G +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  237 bits (581), Expect = 4e-63
 Identities = 107/178 (60%), Positives = 133/178 (74%)
 Frame = +3

Query: 117 EEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 296
           E D+  ML+A  HLG +N N+ ME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 297 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 476
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 477 QPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREVLRLXGVL 650
           QPI E +  NIP IA C+TDSP+ FVDI  P N K  HSIG ++WLLAR VL++ G +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 438 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAXPCNTKSS 587
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 155 SWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 274
           SW     LP GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 393 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 494
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 125 CHQNACCNHPSWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 304
           CH   C   P  G++   P G    Q       CD +A   G TC     C  HR P  C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366

Query: 305 VRHLITALRSACCTEVCR 358
            R           T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 221 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 343
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,059
Number of Sequences: 28952
Number of extensions: 356356
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)