Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G01
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   8e-39
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            30   0.93 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.2  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 29   2.8  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.0  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)                 27   8.7  
SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032)                 27   8.7  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   8.7  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  156 bits (379), Expect = 8e-39
 Identities = 75/95 (78%), Positives = 83/95 (87%), Gaps = 2/95 (2%)
 Frame = +1

Query: 193 RNVRSLEKV--CADLINGAXKXKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFXMXI 366
           + VR+  KV  CADLI GA + KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR+ M I
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 367 HXRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 471
           H R+IDLHSPSEIVKQITSI+IEPGV+VEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 192 SQCALAREGLC*PNQWSQXTXAACKGPSPHANQDPAYHHP 311
           S C  A  GLC P  +   +  +  GPSP +  DP+   P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 228
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +3

Query: 105 GSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALAREGL 221
           GSR   R RHR  PGR  P  P    S+ ++ A AR GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 267  GPSPHANQDPAYHHP 311
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 162 YPPHQDHSYFSQCALAR---EGLC*PNQWSQXTXAACKGPSPHANQDPAYHHP 311
           Y P   +SY + CA  +   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
          Length = 345

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 488 IGGSAYASAMVTSTCTPGSMLIEVIC--FTISEGECRSITLL 369
           +GGS Y   ++ + CTP + L+E  C    + E  C   TLL
Sbjct: 292 LGGSLYPYPLLEAPCTP-TPLLEATCTPTPLLEATCTPTTLL 332


>SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032)
          Length = 244

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 488 IGGSAYASAMVTSTCTPGSMLIEVIC--FTISEGECRSITLL 369
           +GGS Y   ++ + CTP + L+E  C    + E  C   TLL
Sbjct: 191 LGGSLYPYPLLEAPCTP-TPLLEATCTPTPLLEATCTPTTLL 231


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 94  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 216
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 66  KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYPPHQ 176
           +S ++   +  +H S  S V+ R+R   G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,337
Number of Sequences: 59808
Number of extensions: 319179
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)