Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G01
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 166 8e-42
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 166 8e-42
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 164 3e-41
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 164 3e-41
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 51 5e-07
At3g06960.2 68416.m00827 expressed protein 28 4.1
At3g06960.1 68416.m00826 expressed protein 28 4.1
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 7.1
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 27 9.4
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 166 bits (403), Expect = 8e-42
Identities = 74/109 (67%), Positives = 92/109 (84%)
Frame = +1
Query: 145 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRKTPC 324
+A + IH+IRITL+S+NV++LEKVC DL+ GA +LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 325 GEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 471
GEG+ TWDRF + +H RVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 166 bits (403), Expect = 8e-42
Identities = 74/109 (67%), Positives = 92/109 (84%)
Frame = +1
Query: 145 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRKTPC 324
+A + IH+IRITL+S+NV++LEKVC DL+ GA +LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 325 GEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 471
GEG+ TWDRF + +H RVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 164 bits (398), Expect = 3e-41
Identities = 73/103 (70%), Positives = 89/103 (86%)
Frame = +1
Query: 163 IHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRKTPCGEGSKT 342
IH+IRITL+S+NV++LEKVC DL+ GA +LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 343 WDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 471
WDRF + +H RVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 164 bits (398), Expect = 3e-41
Identities = 73/103 (70%), Positives = 89/103 (86%)
Frame = +1
Query: 163 IHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRKTPCGEGSKT 342
IH+IRITL+S+NV++LEKVC DL+ GA +LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 343 WDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIADA 471
WDRF + +H RVIDL S ++VKQITSI IEPGV+VEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 50.8 bits (116), Expect = 5e-07
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMP 285
A+ V S I +++P +IRI L S V +E C +++ A + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 286 TKILRITTRKTPCGEGSKTWDRFXMXIHXRVID-LHSPSEIVKQITSINIEPGVQVEVTI 462
TK K+P + F + H R+ID L+ ++ + + +++ GV VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 173 MRWIGETSAWGFSMSLPDT 117
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 173 MRWIGETSAWGFSMSLPDT 117
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -1
Query: 213 LERAH--IARSKSDPDAVDRGDLCL 145
++R H +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 166 G*GRPLPGVSRCLCLTLQRLPCCLLNSGR--DKQLFNQKLFSAEPEKPHVSS 17
G G+ + G++ CL ++ P C + N +A PEKPH+S+
Sbjct: 232 GIGKSMSGMAFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKPHISA 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,646,226
Number of Sequences: 28952
Number of extensions: 216298
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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