Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F23
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 176 6e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 176 6e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 174 2e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 174 2e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 57 6e-09
At3g06960.2 68416.m00827 expressed protein 28 4.2
At3g06960.1 68416.m00826 expressed protein 28 4.2
At3g61690.1 68416.m06913 expressed protein 27 5.5
At4g23250.1 68417.m03352 protein kinase family protein contains ... 27 7.3
At3g18310.1 68416.m02330 expressed protein 27 7.3
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 27 9.6
At3g62070.1 68416.m06974 expressed protein hypothetical protein ... 27 9.6
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai... 27 9.6
At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein ... 27 9.6
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 176 bits (429), Expect = 6e-45
Identities = 78/109 (71%), Positives = 97/109 (88%)
Frame = +1
Query: 145 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 324
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 325 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 471
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 176 bits (429), Expect = 6e-45
Identities = 78/109 (71%), Positives = 97/109 (88%)
Frame = +1
Query: 145 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 324
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 325 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 471
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 174 bits (424), Expect = 2e-44
Identities = 77/103 (74%), Positives = 94/103 (91%)
Frame = +1
Query: 163 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 342
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 343 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 471
WDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 174 bits (424), Expect = 2e-44
Identities = 77/103 (74%), Positives = 94/103 (91%)
Frame = +1
Query: 163 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 342
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 343 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 471
WDRF++R+HKRVIDL S ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 57.2 bits (132), Expect = 6e-09
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 285
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 286 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 462
TK K+P + F++R H+R+ID L+ ++ + + +++ GV+VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 173 MRWIGETSAWGFSMSLPDT 117
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 173 MRWIGETSAWGFSMSLPDT 117
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 27.5 bits (58), Expect = 5.5
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +3
Query: 18 LKREVSPASALNNF*LKSCLSR----PEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDHS 185
L++ V P + +NNF + +R PE + HG +R R P G
Sbjct: 474 LQQTVKPETLVNNFHGRHIFARTRSSPELTETHGEALLQSRRSRAAPDAGKRQTNSTRVD 533
Query: 186 YFSQCALTREGLC*PHQWSQETEAACKGPSPHANQDPA 299
+ +L E L ++S ++ + PSP + A
Sbjct: 534 SIRKKSLESETLSSGVRYSADSSSVRHTPSPQSPDSTA 571
>At4g23250.1 68417.m03352 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 998
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 69 SCLSRPEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALTRE 215
SC R E G+ S+ RH P R L PP + S +Q +T++
Sbjct: 228 SCFFRWELYTFFGAFDSINARHPPPPPRPLSPPPLKTPSVTNQTNITKK 276
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 237 WSQETEAACKGPSPHANQDPA 299
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 397 RESVGRSLSCGFASENDPRSLNLH 326
+E +G SLS GF+ ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At3g62070.1 68416.m06974 expressed protein hypothetical protein
F14M4.23 - Arabidopsis thaliana, PIR:T02193
Length = 228
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 9 KSYLKREVSPASALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRETPGRGL 158
+ + V+P+ + L E NK +GS+CS+R++ RE +G+
Sbjct: 73 RGFYSLPVTPSRRRRKLTVSGELDANESNK-NGSKCSLRRQRREKKKKGV 121
>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 692
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +2
Query: 311 GKLLAVKVQRPGI 349
GK++AVKVQRPG+
Sbjct: 212 GKVVAVKVQRPGV 224
>At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 365
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 118 LQRLPCCLLNSGRDKQLFNQKLFSAEAGETSRFK*LL 8
+Q + CC S + N F AG + RFK LL
Sbjct: 61 MQNVSCCSSRSLESSRFVNTVKFEENAGYSDRFKGLL 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,570
Number of Sequences: 28952
Number of extensions: 256897
Number of successful extensions: 649
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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