Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F20
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08620.1 68417.m01419 sulfate transporter identical to sulfat...    29   2.4  
At1g78000.2 68414.m09090 sulfate transporter (Sultr1;2) identica...    29   2.4  
At1g78000.1 68414.m09089 sulfate transporter (Sultr1;2) identica...    29   2.4  
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    29   3.2  
At1g08990.1 68414.m01003 glycogenin glucosyltransferase (glycoge...    27   7.5  
At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing ...    27   9.9  
At1g22150.1 68414.m02769 sulfate transporter (Sultr1;3) identica...    27   9.9  

>At4g08620.1 68417.m01419 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:3777483
          Length = 649

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 418 KFRGSLVPGQTVPGLCVP 471
           KFRG L+ G T+  LC+P
Sbjct: 84  KFRGDLIAGLTIASLCIP 101


>At1g78000.2 68414.m09090 sulfate transporter (Sultr1;2) identical
           to sulfate transporter Sultr1;2 [Arabidopsis thaliana]
           GI:7768660; contaisn Pfam profiles PF00916: Sulfate
           transporter family and PF01740: STAS domain; contains
           TIGRfam profile TIGR00815: sulfate permease
          Length = 653

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 418 KFRGSLVPGQTVPGLCVP 471
           KFRG L+ G T+  LC+P
Sbjct: 89  KFRGDLISGLTIASLCIP 106


>At1g78000.1 68414.m09089 sulfate transporter (Sultr1;2) identical
           to sulfate transporter Sultr1;2 [Arabidopsis thaliana]
           GI:7768660; contaisn Pfam profiles PF00916: Sulfate
           transporter family and PF01740: STAS domain; contains
           TIGRfam profile TIGR00815: sulfate permease
          Length = 653

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 418 KFRGSLVPGQTVPGLCVP 471
           KFRG L+ G T+  LC+P
Sbjct: 89  KFRGDLISGLTIASLCIP 106


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 325 ALNFVISYLYNKLPRRRVNIFGEELXKALKDKFRGSLVPGQTVPGLCVPMPENWRPTGS 501
           A N+   YL + L R   N++ +   +ALKD    S+VP        +    N+ P GS
Sbjct: 606 AFNYTDHYLNSVLGRYDGNVYPKLFEEALKDPLNDSVVPDGYKNTFDLCFSSNFVPLGS 664


>At1g08990.1 68414.m01003 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
           Oryctolagus cuniculus [SP|P13280]
          Length = 424

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 138 TVYSIFF-NCKP*HRIRRADVRVGRVLLTQWLSQP 239
           TVY +F  +C P H I R D RV RV    W+ +P
Sbjct: 53  TVYVVFIGSCGPMHEIFRCDERVKRV-GDYWVYRP 86


>At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing
           protein nearly identical to H-protein promoter binding
           factor-2b (Arabidopsis thaliana) GI:3386548
          Length = 399

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 421 FRGSLVPGQTVPGLCVPMPENWRPTGSSA 507
           ++G L P   +P    P P  W PTG +A
Sbjct: 245 YQGFLPPQVMLPNNSSPWPYQWSPTGPNA 273


>At1g22150.1 68414.m02769 sulfate transporter (Sultr1;3) identical
           to sulfate tansporter Sultr1;3 [Arabidopsis thaliana]
           GI:10716805; contains Pfam profile PF00916: Sulfate
           transporter family; contains Pfam profile PF01740: STAS
           domain;  contains TIGRfam profile TIGR00815: sulfate
           permease
          Length = 656

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 421 FRGSLVPGQTVPGLCVP 471
           FRG L+ G T+  LC+P
Sbjct: 93  FRGDLIAGLTIASLCIP 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,758,536
Number of Sequences: 28952
Number of extensions: 295283
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)