Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F16
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            31   0.41 
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.2  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               28   3.8  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   3.8  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   3.8  
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)                 27   6.6  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   6.6  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)                    27   8.8  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 48/49 (97%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIADA 477
           GEGSKTWDR++MRIHKR+IDLHSPSEIVKQITSI+IEPGV VEVTIADA
Sbjct: 52  GEGSKTWDRYEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 34/46 (73%), Positives = 39/46 (84%), Gaps = 2/46 (4%)
 Frame = +3

Query: 198 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 329
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPC
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPC 51


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 197 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP*NSLLV 334
           S C     GLC P  +   ++ +  GPSP +  DP+   P  ++L+
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDPAYTVLI 457


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 167 YSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 316
           Y P   +SY + CA T+   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 132 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 233
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +1

Query: 277  QSACQPRSCVSPPVKLLVGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXV 456
            ++   P S V P + ++  +   T + + +++H R     +P   V  +T++  E  +  
Sbjct: 1832 ETTMAPESTVGPEITIV--DNFSTRNNYGVKVHSRPGTTLAPKSTVASVTTMAPESTLAP 1889

Query: 457  EVTIA 471
            E+TIA
Sbjct: 1890 EITIA 1894


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 32  EVSPASALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRETP-GRGLPY 169
           E++P  +L +      L R E  K+H    S++   ++TP GRGL Y
Sbjct: 454 ELAPHGSLASVMEDITLGRRETEKEHVGAKSIKYETKQTPLGRGLTY 500


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 498 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 358
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 272  GPSPHANQDPAYHHP*NSLLVKVQRP 349
            GP PH+ Q P  HHP +   ++   P
Sbjct: 1189 GPPPHSMQQPLLHHPQDPHHIQAMEP 1214


>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
          Length = 198

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 110 GSRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTREGL 226
           GSR   R RHR  PGR  P  P    S+ ++ A  R GL
Sbjct: 2   GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYSPHQ 181
           +S ++   +  +H S  S V+ R+R   G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 505 KNILLAALPTRRRWSPQP 452
           +N+++  LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 99  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 221
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)
          Length = 978

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 269 KGPSPHANQDPAYHHP*NSLLVKVQRPGIVFRCEST 376
           +GPSP+A   PA  +P      KV+R G     E T
Sbjct: 654 EGPSPYAQDGPAAEYPVKKRERKVRREGQFSNVEIT 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,788
Number of Sequences: 59808
Number of extensions: 349816
Number of successful extensions: 807
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)