Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F15
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      127   7e-30
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      30   1.4  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   1.9  
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    28   4.4  
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          28   5.8  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.8  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)                   27   7.6  
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  127 bits (306), Expect = 7e-30
 Identities = 55/78 (70%), Positives = 68/78 (87%)
 Frame = +3

Query: 87  HLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 266
           ++F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGKTGRVYNVT  AL
Sbjct: 435 YMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTGRVYNVTKRAL 494

Query: 267 GVIVNKRVRGRIIPKRIN 320
           GV+VNK+V+G+I+ KRIN
Sbjct: 495 GVVVNKQVKGKILAKRIN 512


>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +3

Query: 171 DIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSK 350
           DI G G+   GMP +      G+V ++   A GV++    R      ++   + H  HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSK 159

Query: 351 CRQDFLXRVKENERLLKEAKAAG 419
               F+ R+K       E K  G
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRG 181


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 KRINIRVEH-VKHSKCRQDFLXRVKENERLLKEAKAAGKT 425
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 248  RDCSCSRCDCQQACSRKDYTEAHQYPC 328
            +D +C  CD  Q C   + T  HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 VNLKRQPAPPKAAHIVSGTXKPVLLAPIPYE 518
           VN  +   PP A + ++   +PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 195 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 335
           ++G PH+ + G TGR       A+  + +K +  +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 375 VKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTXKPVLLAPIP 512
           VK  +R  +E +     +NL ++PA P K    +    KPV   P P
Sbjct: 273 VKRTQRRQRELEEVADAINLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 283
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 331 SMSSTPSADKTSLXESKRMRGY*RKPRLPARPST*RDSQLPLKLP 465
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 173  HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 328
            H + WC++     +   W +     + C  S C    ACS+   T A  Y C
Sbjct: 1804 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 1853


>SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)
          Length = 93

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 173 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 328
           H + WC++     +   W +     + C  S C    ACS+   T A  Y C
Sbjct: 30  HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 79


>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 228 KTGRVYNVTAHALGVIVNKRV--RGRIIPKRINIRVEHVKHSKCRQDFLXRVKENERLLK 401
           +TG+V   T    G ++   +  RG +     N    H  HS CRQ+   + K  E + K
Sbjct: 112 RTGKVERRTPKVGGEMLGIPLVLRGILEMDPENALSHHSNHSFCRQEQHIQKKNTEEIEK 171

Query: 402 EAKAAGKTV 428
            AK    TV
Sbjct: 172 AAKNQSNTV 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,694
Number of Sequences: 59808
Number of extensions: 365039
Number of successful extensions: 1068
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)