Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F09
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 309 9e-85
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 30 1.5
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 2.0
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 27 8.1
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2) 27 8.1
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_15903| Best HMM Match : Gate (HMM E-Value=6) 27 8.1
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 309 bits (759), Expect = 9e-85
Identities = 151/173 (87%), Positives = 160/173 (92%)
Frame = +2
Query: 47 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 226
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 227 RIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 406
RIRELTSVVQKRF PE SV LYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 407 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 565
FIMESGA+GCEVVVSGKLRGQRAKSMKFV GLM+H+G+P YV+TA HV L
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYL 177
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 131 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVA 310
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 311 TRGLCAIAQA 340
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.9 bits (64), Expect = 1.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 451 WQAAWSTCQINEVCXWTHDPLW 516
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 445 CIWQAAWSTCQINEVCXWTHDPLWRP 522
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 310 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 432
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 277 LWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH 149
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 611
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 307 GYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSP 405
GY+++LRY+P ++ R++R + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391
>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
Length = 120
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 92 ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 268
E+ E + + +AE +G SG EV+ ++ + ++ +TQ E ++ +EL + +KR N
Sbjct: 20 EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74
Query: 269 IPE 277
+P+
Sbjct: 75 LPQ 77
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 173 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVXL 292
E+I + +T V+GE GR I + S R I E +
Sbjct: 399 EVIPLGAKTSRVIGEGGRSINSIRSQSGARIQIKEDKAYI 438
>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
Length = 444
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 307 GYSWSLRYRPGRISKIQAYRRSRCTSCLLW 396
G +W +R P + + +A+R +R SC LW
Sbjct: 88 GKNWKVRASPAWVRRYRAFRHAR--SCSLW 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,619
Number of Sequences: 59808
Number of extensions: 358678
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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