Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F05
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   113   1e-25
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             113   1e-25
At4g29950.2 68417.m04261 microtubule-associated protein identica...    30   1.5  
At4g29950.1 68417.m04260 microtubule-associated protein identica...    30   1.5  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   2.7  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.5  
At2g30020.1 68415.m03652 protein phosphatase 2C, putative / PP2C...    27   8.2  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  113 bits (272), Expect = 1e-25
 Identities = 68/127 (53%), Positives = 79/127 (62%), Gaps = 4/127 (3%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIP 409
           + VLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG   +P
Sbjct: 65  QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLP 124

Query: 410 XLTDGNVPRRLGPKRASKIRKLFNL--SXXXXXXXXXXXXXLPAXEGKENAKPRHNAPXI 583
            LTD   PR  GPKRASKIRKLFNL                    +GKE +K    AP I
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSK----APKI 180

Query: 584 QRLVTPV 604
           QRLVTP+
Sbjct: 181 QRLVTPL 187



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 41/66 (62%), Positives = 50/66 (75%)
 Frame = +1

Query: 43  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 223 FPMKQG 240
           FPMKQG
Sbjct: 61  FPMKQG 66


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  113 bits (271), Expect = 1e-25
 Identities = 66/125 (52%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIP 409
           + VLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG   +P
Sbjct: 65  QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLP 124

Query: 410 XLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQR 589
            LTD   PR  GPKRASKIRKLFNL                    K   K    AP IQR
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKK--GKKVSKAPKIQR 182

Query: 590 LVTPV 604
           LVTP+
Sbjct: 183 LVTPL 187



 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 43  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 223 FPMKQG 240
           FPMKQG
Sbjct: 61  FPMKQG 66


>At4g29950.2 68417.m04261 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 703

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 67  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGR 243
           A  C Q+L    ++  +R   EK    +  A  L D+ +   L +  G D+   P    R
Sbjct: 276 AASCLQRLLNFPEKIDVRKIIEKAKSLQTLA--LDDDVRSSALSINDGFDQSISPAVPAR 333

Query: 244 PDKQPCSSSDVKGPLMLQTAPRWREK 321
            +  P  S+  K PL++     W ++
Sbjct: 334 TNSFPSGSTSPKSPLIITPQSYWEDQ 359


>At4g29950.1 68417.m04260 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 828

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 67  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGR 243
           A  C Q+L    ++  +R   EK    +  A  L D+ +   L +  G D+   P    R
Sbjct: 401 AASCLQRLLNFPEKIDVRKIIEKAKSLQTLA--LDDDVRSSALSINDGFDQSISPAVPAR 458

Query: 244 PDKQPCSSSDVKGPLMLQTAPRWREK 321
            +  P  S+  K PL++     W ++
Sbjct: 459 TNSFPSGSTSPKSPLIITPQSYWEDQ 484


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 79  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 174
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 64  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 231
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At2g30020.1 68415.m03652 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C
           (GI:4587992){Arabidopsis thaliana}
          Length = 396

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 352
           RAV++   V   +S  H   RP RD ERKR    G  VD
Sbjct: 253 RAVMSVGGVAKALSSDH---RPSRDDERKRIETTGGYVD 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,134
Number of Sequences: 28952
Number of extensions: 255361
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)