Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F04
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20150.1 68416.m02554 kinesin motor family protein contains P...    29   1.2  
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    28   2.1  
At2g29490.1 68415.m03582 glutathione S-transferase, putative sim...    27   6.3  

>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 106 LYSHEIRKDVRLENLKSLKLEDAWPFIXDEIEIEIGSRQ 222
           L S    KD+  E L+  ++E  W  + DE  +EI +++
Sbjct: 877 LRSKNAEKDIEEERLRCTEMESEWISLTDEFRVEIETQR 915


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 247 EADLYKVTSLFVPNEKEINGKNFTPLGRIVKKLNKKKSM 363
           + +  ++ ++     KEI G+N T +  +V+KL +KKS+
Sbjct: 789 DVEALRILNMCYERAKEILGRNRTLMDEVVEKLVQKKSL 827


>At2g29490.1 68415.m03582 glutathione S-transferase, putative
           similar to glutathione S-transferase 103-1A [Arabidopsis
           thaliana] SWISS-PROT:P46421
          Length = 224

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 181 FIXDEIEIEIGSRQLVCIPHITEADLYKVTSLFVPNEKEINGKNF 315
           FI D+I + +G R LV      E  + +   L +  EKE+ GK+F
Sbjct: 103 FIDDQI-LTLGFRSLVKAEKGREVAIEETRELLMFLEKEVTGKDF 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,976,974
Number of Sequences: 28952
Number of extensions: 113384
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)