Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E22
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   268   4e-72
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     59   4e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              44   1e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.27 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.62 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   4.4  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  268 bits (656), Expect = 4e-72
 Identities = 137/187 (73%), Positives = 150/187 (80%)
 Frame = +3

Query: 96  DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 275
           D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRKDEQDR
Sbjct: 6   DQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDR 65

Query: 276 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 455
           CITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66  CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123

Query: 456 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXLYXTFXRI 635
           DGAL           QTETVLRQAIAERIKP+LFMNKMDR            LY TF RI
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR-ALLELQLDQEDLYQTFARI 182

Query: 636 VXNVNVI 656
           V ++NVI
Sbjct: 183 VESINVI 189


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 48.8 bits (111), Expect(2) = 3e-09
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +3

Query: 132  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 293
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993



 Score = 30.3 bits (65), Expect(2) = 3e-09
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 396  IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 572
            + + GHVDFS EV+ +L    G +           QT +    A    +  I  +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 43/153 (28%), Positives = 68/153 (44%)
 Frame = +3

Query: 117 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 296
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A ++               IK  
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51

Query: 297 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 476
           A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  +   
Sbjct: 52  ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110

Query: 477 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 575
                   QTE ++       I  I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +3

Query: 423 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 575
           + +V+ A+R+ DGAL           QT  VLRQA  E I+P L +NK+DR
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 71



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +3

Query: 429 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 575
           +V+ A+R+ DGAL           QT  VLRQA  E I+P L +NK+DR
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 141


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 366 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 545
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+  ++ 
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130

Query: 546 PILFMNKMDR 575
            I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 141 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 242
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 114 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 209
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 141 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 242
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 387 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 566
           I  +D+PGH  F++      +VTD  +           QT+  +  A A  +  I  +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199

Query: 567 MDR 575
           +D+
Sbjct: 200 IDK 202


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 499 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 329
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 328 FSSSSK 311
             SS K
Sbjct: 672 MGSSDK 677


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 460 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 338
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 517  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 377
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 499 THTPDTQSTTTRAPSVTRSAAVTSEEKST 413
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372


>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 461 SPCGC*LCVWCVCTNR 508
           SPC    C+WC C+ R
Sbjct: 18  SPCALYFCIWCECSKR 33


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 93  LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 260
           ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T +
Sbjct: 117 IEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTER 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,897
Number of Sequences: 59808
Number of extensions: 392122
Number of successful extensions: 1322
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)