Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E21
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 180 7e-46
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 147 6e-36
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.7
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.7
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 9.7
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 9.7
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.7
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.7
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 180 bits (439), Expect = 7e-46
Identities = 93/191 (48%), Positives = 119/191 (62%), Gaps = 14/191 (7%)
Frame = +2
Query: 107 KGKLIIMLVNASLV-QDKNKYNTP------KYRLIVRLS-NK------DVTCQVAYSRIE 244
K + ++ + N ++ Q++NK P KYR R NK ++AY++++
Sbjct: 43 KYRFVVRITNKDIICQERNKVGGPIFGSTQKYRRNSRGKYNKRNIFILQTYARIAYAKLD 102
Query: 245 GDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEY 424
GD ++ +AY+HELP +GVKVGLTNYAAAY TG EY
Sbjct: 103 GDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEY 162
Query: 425 NVEPVDNGPXAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKF 604
NVE VD P AF C+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFP YD+ SK F
Sbjct: 163 NVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESKDF 222
Query: 605 NAEVHRAHIFG 637
+AEVHR HIFG
Sbjct: 223 SAEVHRNHIFG 233
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +2
Query: 143 LVQDKNKYNTPKYRLIVRLSNKDVTCQ 223
+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 32 ITQDKNKYNTPKYRFVVRITNKDIICQ 58
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 94 TRRREGKTDYYARKRL 141
+RR +GKTDYYARKRL
Sbjct: 16 SRRSQGKTDYYARKRL 31
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 147 bits (357), Expect = 6e-36
Identities = 67/112 (59%), Positives = 78/112 (69%)
Frame = +2
Query: 224 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 403
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 404 XXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 559
EYNVE +D P AF C+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 185 LIVRLSNKDVTCQVAYSRIEGD-HIVC 262
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 233 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 331
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 191 VRLSNKDVTCQVAYSRIEGDHIVCAAY 271
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 95 RGVVKGKLIIMLVNASLVQDKNKYNTPKYRLI 190
R V G ++ M + + LV +K+NTPKYR +
Sbjct: 364 RNVYMGVIVSMGLLSVLVSLWSKFNTPKYRCL 395
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 191 VRLSNKDVTCQVAYSRIEGDHIVCAAY 271
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 259 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 375
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,136
Number of Sequences: 59808
Number of extensions: 384629
Number of successful extensions: 990
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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