Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E20
(378 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.54
SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4) 29 1.7
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 2.2
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 28 2.2
SB_31245| Best HMM Match : Mak16 (HMM E-Value=1.8) 28 2.2
SB_31013| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_26183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 6.7
SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0) 26 8.8
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 26 8.8
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 26 8.8
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 26 8.8
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2) 26 8.8
>SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 30.3 bits (65), Expect = 0.54
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 169 QNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 303
Q+ GTEDA E +SV ++ + Q Q++ +Q ++LKD +S
Sbjct: 484 QSVGTEDAKSETLSVQDEELQGLQQQHALLQKMLEQQQQLKDLQS 528
>SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)
Length = 153
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQDDFN 258
+D DD+ V +D+ EDDV+ DD++
Sbjct: 70 DDNDDDEVDDDDDDVEDDVLDDDYD 94
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 175 WGTEDADDEXVSVWEDNWEDDVIQDD 252
W ED DD+ W+D+ ED+ +D+
Sbjct: 1115 WEGEDEDDDIKESWDDDDEDEKKEDE 1140
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 178 GTEDADDEXVSVWEDNWEDDVIQDD 252
G +DADDE +++ +D+ DD I D
Sbjct: 397 GDDDADDEDINIGDDDAADDDIYGD 421
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 187 DADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 294
DADDE +++ +D+ +DD I D + + + D
Sbjct: 297 DADDEDINIGDDDADDDDIYGDDDDDINSDDDAADD 332
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 187 DADDEXVSVWEDNWEDDVIQDDFN 258
DADDE ++ +D +DD I D+N
Sbjct: 171 DADDEDINSDDDAADDDNINGDYN 194
>SB_31245| Best HMM Match : Mak16 (HMM E-Value=1.8)
Length = 325
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 109 TESXPCVCXKRMTSSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQL 267
T S C + + SS F + +D DD+ V +D+ +DD +DD + L
Sbjct: 273 TSSSLCPSSEGLHSSIGFSADDDDDDDDDDDVDDVDDDDDDDDDDEDDDDDHL 325
>SB_31013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE +V D+ DDVI DD N + ++ E
Sbjct: 31 DDESKNVMNDH--DDVIDDDVNDETQEDKE 58
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + +++ E
Sbjct: 1258 DDESKDVMNDH--DDVIDDDVNDETQEEEE 1285
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 1323 DDESKDVMNDH--DDVIDDDVNDETQEDEE 1350
>SB_26183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 157 NFPRQNWGTEDADDEXVSVWEDNWEDDVIQDD 252
NFP +G +D DD+ +D+ +DD DD
Sbjct: 5 NFPSNLYGRDDDDDDDDDDDDDDDDDDDDDDD 36
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 178 GTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQL 279
GTED + E ED+ DD D N++ ++Q+
Sbjct: 1675 GTEDVEKEDTKKKEDDKADDESNDKGNRRRKRQI 1708
>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 670
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 136 KRMTSSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDD 252
KRMT N N D DD+ +D+ +DD DD
Sbjct: 594 KRMTDKNNDNNNNNNNNDDDDDDDDDDDDDDDDDDDDDD 632
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 1350 DDESKDVMNDH--DDVIDDDVNDETQEDEE 1377
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 550 DDESKDVMNDH--DDVIDDDVNDETQEDEE 577
>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 108 DDESKDVMNDH--DDVIDDDVNDETQEDEE 135
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 303
E+ D+E + E+++++D+ DD L ++ E++ ++K+
Sbjct: 1836 EEEDEEEDEIEEEDYDEDIGDDD--DDLEEEAEEVAERKA 1873
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 36 DDESKDVMNDH--DDVIDDDVNDETQEDEE 63
>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 207 DDESKDVMNDH--DDVIDDDVNDETQEDEE 234
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 279 DDESKDVMNDH--DDVIDDDVNDETQEDEE 306
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 193 DDEXVSVWEDNWEDDVIQDDFNQQLRQQLE 282
DDE V D+ DDVI DD N + ++ E
Sbjct: 108 DDESKDVMNDH--DDVIDDDVNDETQEDEE 135
>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
Length = 278
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 145 TSSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQD 249
TSS N +Q+ G +D D++ ++ E ++ D ++D
Sbjct: 19 TSSGNSNQQSHGEQDGDEQSLTRTETDFHRDHLED 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,258,583
Number of Sequences: 59808
Number of extensions: 128327
Number of successful extensions: 601
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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