Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E20
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 48 3e-06
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 48 3e-06
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 46 1e-05
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 30 0.59
At4g31630.1 68417.m04493 transcriptional factor B3 family protei... 28 1.8
At1g74870.1 68414.m08677 expressed protein contains similarity t... 28 2.4
At1g07210.1 68414.m00767 30S ribosomal protein S18 family contai... 27 3.1
At5g59230.1 68418.m07423 transcription factor-related low simila... 27 4.1
At5g20930.1 68418.m02486 protein kinase, putative nearly identic... 27 5.5
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 26 7.2
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 26 7.2
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 26 7.2
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 26 7.2
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 26 9.6
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 47.6 bits (108), Expect = 3e-06
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +1
Query: 169 QNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
++W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 47.6 bits (108), Expect = 3e-06
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +1
Query: 169 QNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
++W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 45.6 bits (103), Expect = 1e-05
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +1
Query: 169 QNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
++W ++ E WED+W+DD + DDF++QL+++LE ++K
Sbjct: 30 EDWLEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 29.9 bits (64), Expect = 0.59
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 211 VWEDNWEDDVIQDDFNQQLRQQLEK 285
VWE W+ ++ +DF ++LR QLE+
Sbjct: 156 VWEHTWK--ILSEDFKRKLRNQLER 178
>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
similar to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 512
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 181 TEDADDEXVSVWEDNWEDDVIQDDFN 258
T D DD+ +V++D+ +DDV DD N
Sbjct: 114 TSDDDDDERTVFDDDEDDDVGDDDDN 139
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 214 WEDNWED-DVIQDDFNQQLRQQLEKLKDQKS 303
W W+ +V +++ ++LR LEKL DQK+
Sbjct: 43 WISQWKKANVDEEEIGRRLRSLLEKLTDQKA 73
>At1g07210.1 68414.m00767 30S ribosomal protein S18 family contains
Pfam profile: PF01084 ribosomal protein S18; similar to
30S ribosomal protein S18 (SP:P80382) {Thermus
thermophilus}
Length = 261
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 121 PCVCXKRMTSSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 294
P V T++ P QN + D+ D S++ D +D +DF Q L + + +D
Sbjct: 22 PIVSRSLATNANEDPNQNRSSFDSSDNLDSLFGDYTGNDEKSNDFFQHLSKAEKDKRD 79
>At5g59230.1 68418.m07423 transcription factor-related low
similarity to transcription factor IIA large subunit
[Arabidopsis thaliana] GI:2826884
Length = 186
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 187 DADDEXVSVWEDNWEDDVIQDDFNQQ--LRQQLEKLKDQKS 303
D ++E ++ +D+ EDD+ DD N Q + Q +K+K K+
Sbjct: 117 DENEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKN 157
>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
to protein kinase tousled gi|433052|gb|AAA32874
Length = 688
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 DNWEDDVIQDDFNQQLRQQLE 282
+ WED + D N QLRQ LE
Sbjct: 295 ETWEDGQMLKDLNAQLRQLLE 315
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 148 SSKNFPRQNWGTEDADDEXVSVWEDNWEDDV 240
S+K PR+ W ADD + V+ N D V
Sbjct: 62 SAKFIPRKQWVVAGADDMYIRVYNYNTMDKV 92
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 148 SSKNFPRQNWGTEDADDEXVSVWEDNWEDDV 240
S+K PR+ W ADD + V+ N D V
Sbjct: 62 SAKFIPRKQWVVAGADDMYIRVYNYNTMDKV 92
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 148 SSKNFPRQNWGTEDADDEXVSVWEDNWEDDV 240
S+K PR+ W ADD + V+ N D V
Sbjct: 62 SAKFIPRKQWVVAGADDMYIRVYNYNTMDKV 92
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 303
ED+ + V V ++ + DV D + +Q LE K+Q S
Sbjct: 79 EDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQVS 118
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 163 PRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
P W ED + E V ED D +DD +Q R + + KD++
Sbjct: 67 PLLKWKVEDRNKERSGVVED----DDYEDDNHQVARSETTRRKDRR 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,620,577
Number of Sequences: 28952
Number of extensions: 83722
Number of successful extensions: 290
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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