Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E16
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     29   1.7  
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 455 VFXSTY*LEKMLCHHQNGIENLDCHSKHLSR 363
           V  S   L+ M CHH    + LD HS HL+R
Sbjct: 69  VIESNISLKAMKCHHSENTDTLD-HSDHLNR 98


>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1910

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 330 RLGFSRFARTCSCISLTXSFSRTDVXSYCLESLSDAPCELLEDTV 196
           R   SRF+R+ S IS + S  R+      L  L D+ C LL+D V
Sbjct: 700 RFSSSRFSRSSSSISDSLSSLRSRASWRRLSDLLDSFCVLLDDPV 744


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 266  LENEXVKEIQEQVLANLEKPNLPNVNVPXKIIVCLDVCYDNPNS 397
            L      +  EQ+   L+     +V+ P +I V +D C D+P+S
Sbjct: 1048 LREHRATQSAEQIAQGLKTEMNLSVSEPERIQVIMDACKDDPSS 1091


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,245
Number of Sequences: 59808
Number of extensions: 237823
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)