Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E14
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         56   3e-08
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  44   1e-04
SB_12080| Best HMM Match : p450 (HMM E-Value=0)                        44   1e-04
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_25597| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.088
SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_5584| Best HMM Match : p450 (HMM E-Value=1)                         30   1.9  
SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)                   29   2.5  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_58753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
 Frame = +3

Query: 249  IGVVAFNERFNSFALSEQDPESRSSKTIAAAFGSNSGVMKLDKGFLWKMFSTPLYKKLVN 428
            I  V F++RF        DP++++       F S    + L   +  K++ TP YK+ + 
Sbjct: 896  ISTVLFDKRFGCLD-DHVDPDAQAFIDAVGDFFSCISSLLLIPQWFHKIYETPTYKRFIQ 954

Query: 429  SQIYLXKISTXILIXK-INLFESD-DSKNDK-SLLKTFLQQPQLDHKDIMGMMVDILMAA 599
            S   + + +  ++  K I L +++ +S  DK    +  L   +L   D++  ++D+L A 
Sbjct: 955  SMDTMYEYTGALVEEKKIELMKTELESSEDKPDFFRFLLSSGKLTENDLLASVIDLLFAG 1014

Query: 600  IDTTAYTTSFVLYHIXRN 653
            +DTT+ T  +VLY + +N
Sbjct: 1015 VDTTSNTMLWVLYMMSQN 1032



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 153 NRADNLMNFEDIPGPRSYPIIGT 221
           N+ + ++ F+ IPGP   P++GT
Sbjct: 718 NKPETILAFDQIPGPPCLPLLGT 740


>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
 Frame = +3

Query: 249 IGVVAFNERFNSFALSEQDPESRSSKTIAAAFGSNSGV-MKLDKGFLWKMFSTPLYKKLV 425
           IG +AF+ R   +    ++   R  + +   F     + + ++K F ++   TP YKK  
Sbjct: 207 IGTMAFDTRIGLYEDPPKEDPKRFIECVHEFFEMTQNLELSMEKSF-FEFMDTPSYKKFC 265

Query: 426 NSQIYLXKISTXILIXKINLFES-----DDSKNDKS--LLKTFLQQPQLDHKDIMGMMVD 584
            +Q  + +I    +  K+   E      ++   +K+  +L   L + +L   +I    ++
Sbjct: 266 RAQDDVMRIGQKYIDMKMVELEEMAKSPEEMLEEKAVPILTYMLAKKELSPHEINISAIE 325

Query: 585 ILMAAIDTTAYTTSFVLYHIXRN 653
           + MA +DTT+ T  ++LY++ RN
Sbjct: 326 MFMAGVDTTSNTMVWLLYNLARN 348



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 177 FEDIPGPRSYPIIGTLHKYL 236
           FE+IPGP + P +G++H+Y+
Sbjct: 44  FEEIPGPIALPYVGSVHRYM 63


>SB_12080| Best HMM Match : p450 (HMM E-Value=0)
          Length = 522

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
 Frame = +3

Query: 249 IGVVAFNERFNSFALSEQDPESRSSKTIAAAFGSNSGVMKLDKGFLWKMFSTPLYKKLVN 428
           IG V + ++F +F+ S  + ES+S  T      S    M     ++ K + T   K    
Sbjct: 214 IGTVLYEKQFGAFSKSGSE-ESQSIITAIQNLFSVFIKMVFMPVWVTKFYETKAVKMFYQ 272

Query: 429 SQIYLXKISTXIL---IXKINLFESDDSKNDKSLLKTFL-QQPQLDHKDIMGMMVDILMA 596
           S   L   +   +   + +IN    D  +N ++   TFL     L   +I   +V+ILMA
Sbjct: 273 SMDTLYDFTDKCVEEKLKEINERNVDADENSEAEFLTFLVASKSLSLSEITSNLVEILMA 332

Query: 597 AIDTTAYTTSFVLYHIXRN 653
           A+DTT+ T+ +  Y + +N
Sbjct: 333 AVDTTSNTSLWACYCLAKN 351


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 29/144 (20%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
 Frame = +3

Query: 249  IGVVAFNERFNSFALSEQDPESRSSKTIAAAFGSNSGVM--KLDKGFLWKMFSTPLYKKL 422
            +  + F++RF +    E++    +   IA+  G    ++   L   F++K++ T  YK L
Sbjct: 767  VAYMLFDKRFGTL---EENVNPDAQGFIASVGGLLESILPASLLPVFIYKVYETEAYKNL 823

Query: 423  VNSQIYLXKISTXILIXKINLFESD-----DSKNDKSL--LKTFLQQPQLDHKDIMGMMV 581
            V     +   +   +  ++   E +     D ++ + +   +  L   +L   D++  ++
Sbjct: 824  VYHFDRMYNYAEKFIGERVQELEKEGKLDGDIQDGERVDFFRFLLSSGKLTRDDLLASVI 883

Query: 582  DILMAAIDTTAYTTSFVLYHIXRN 653
            D+L A +DTT+ T  +V Y + ++
Sbjct: 884  DLLFAGVDTTSNTMQWVFYTMGKH 907


>SB_25597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
 Frame = +3

Query: 381 FLWKMFSTPLYKKLVNSQIYLXKISTXILIXKINLFESD-----DSKNDKSL--LKTFLQ 539
           F++K++ T  YK  V     + + +   +  ++   E +     D ++ + +   +  L 
Sbjct: 264 FVYKVYETEAYKNFVYHFDTMYEYAEKFIGERVQELEKEGKLDGDIQDGERVDFFRFLLS 323

Query: 540 QPQLDHKDIMGMMVDILMAAIDTTAYTTSFVLYHIXRN 653
             +L   D++  ++D+L A +DTT+ T  +V Y + ++
Sbjct: 324 SGKLTRDDLLASVIDLLFAGVDTTSNTMQWVFYTMGKH 361


>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 159 ADNLMNFEDIPGPRSYPIIGTLHKYL 236
           A ++  F++IPGP+  P IG++H Y+
Sbjct: 53  AMDIRPFQEIPGPKGLPWIGSIHDYI 78


>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 177 FEDIPGPRSYPIIGTLHKYL 236
           F++IPGP+  P IG++H Y+
Sbjct: 6   FQEIPGPKGLPWIGSIHGYI 25


>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
          Length = 286

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +3

Query: 318 SSKTIAAAFGSNSGVMKLDKGFLW--KMFSTPLYKKLVNSQIYLXKISTXILIXK---IN 482
           S   I A     +G +K+    +W  K + T   K+   S   L   +   +  K   IN
Sbjct: 184 SQSIITAVQNLLAGFIKIFFMPVWVTKFYETKAVKRFYQSMDTLYDFTDKCVEEKLKDIN 243

Query: 483 LFESDDSKNDKSLLKTFL-QQPQLDHKDIMGMMVDILMAAIDT 608
               D  +N ++   TFL     L   +I   +V+ILMAA+DT
Sbjct: 244 ERSVDADENSEAEFLTFLVASKSLSLSEITSNLVEILMAAVDT 286


>SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)
          Length = 695

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 66  IIFPTGRGNVFTEERLKI--LWVVNMPVRSMNRADNLMNFEDIPGPRSYPIIGTLHKY 233
           ++ P    NVF ++R +      V+ P+R  +        +DIP P S+P+  + HK+
Sbjct: 510 VVLPNSEHNVFMDDRRRFDCAGKVSFPIRQSDH-----KHKDIPHPSSFPVRHSDHKH 562


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 223  SVPIMG*LRGPGISSKFMRLSALFIDLTGMFTTHKIFRRSSVNTFPRPVGNI 68
            ++PI+G +     ++K +      IDLTG  T +       VN   RPVGNI
Sbjct: 2398 TLPIVGNITRVAATAKNVNADVT-IDLTGNLTGNATTTNKRVNLNARPVGNI 2448


>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 558 CDPAGVVEEMFLTKIYRFYYHRIRRD 481
           CDPA  V E+FLT+    +Y R + D
Sbjct: 569 CDPAKDVSEIFLTENTFLFYERCKND 594


>SB_58753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 558 CDPAGVVEEMFLTKIYRFYYHRIRRD 481
           CDPA  V E+FLT+    +Y R   D
Sbjct: 13  CDPAKDVSEIFLTENTFLFYERCEND 38


>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 303 DPESRSSKTIAAAFGSNSGVMKLDKGFLWKMFSTPLYKKLVNSQI 437
           + E++  +TI+A+ GS  G+ + + GF W   ++ + + L  SQI
Sbjct: 23  EEENQFVRTISASGGSWIGLKRENDGFRWVADNSLISRSLCRSQI 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,094
Number of Sequences: 59808
Number of extensions: 353388
Number of successful extensions: 662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)