Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E13
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    28   3.1  
Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    26   9.4  

>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 195 NSKRENTIMIFSLNLGICI*PAIFTDN*VIYL*HSKNMNSVYVFHKD 55
           NSK  + I +F L +G+CI  ++ T N   Y    +N   +  ++KD
Sbjct: 134 NSKYISLIHVFQLGVGLCIGSSLITQN--FYWKFERNGIYIQFYNKD 178


>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 73  HTVHILRML*INNLVISENGWSYAYA*I*RENHNSIFPLTIFCMCIILIFELFTKQLLH* 252
           HT+H L    +N+   ++NG  Y Y      +    F +T F   + L+F   T+Q ++ 
Sbjct: 116 HTIHGLFFCRLNHRGETQNGKRYVYF----YSVGKTFFITFFVFSMFLLFASLTEQYVYN 171

Query: 253 FER 261
            +R
Sbjct: 172 ADR 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,574,900
Number of Sequences: 27780
Number of extensions: 119916
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)