Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E12
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          56   1e-08
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   1.6  
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)                    29   2.1  
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)                   27   6.3  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +3

Query: 216 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 347
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  RRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVN 181
           RR++  T SN  R++RTPG  + + V     E+  A V+
Sbjct: 159 RRITKTTNSNSTRLIRTPGQSIHIKVKAPHCENKSAPVD 197


>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 114 HRAGRLVYQYVKKPKKIPRLWSM 182
           HRA R V Q   +P+K PR W +
Sbjct: 271 HRAARFVMQKYSRPRKEPRKWEV 293


>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
          Length = 364

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 132 VYQYVKKPKKIPRLWSMQEQTPLAIQPARPA 224
           V Q  K+ K +P++WS +     A QPA  A
Sbjct: 183 VCQRCKRDKNVPKMWSAENHMDPAEQPAYSA 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,744
Number of Sequences: 59808
Number of extensions: 229381
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)