Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E12
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 66 9e-12
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 64 4e-11
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 64 6e-11
At3g02500.1 68416.m00238 expressed protein 31 0.55
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 28 3.9
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 3.9
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 27 5.1
At1g48740.1 68414.m05454 expressed protein 27 5.1
At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family p... 27 6.8
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 27 9.0
At1g12260.1 68414.m01418 no apical meristem (NAM) family protein... 27 9.0
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 66.5 bits (155), Expect = 9e-12
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
G+LVYQ KK P+ + + I RP+E RSRL ++TV R YGGVL
Sbjct: 28 GKLVYQTTKKRASGPKC-PVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
Score = 50.0 bits (114), Expect = 8e-07
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRL +R R SY TKSNQ RIV+TPG L +K PK V +
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGK 49
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 64.5 bits (150), Expect = 4e-11
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
G+L YQ KK P+ + + I RP E RSRL ++TV R YGGVL
Sbjct: 28 GKLTYQTTKKRASGPKC-PVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
Score = 50.4 bits (115), Expect = 6e-07
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRL +R R SY TKSNQ RIV+TPG L +K PK V +
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGK 49
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 63.7 bits (148), Expect = 6e-11
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
G+L YQ K P+ + + I RPAE RSRL ++TV R YGGVL
Sbjct: 28 GKLTYQTTNKRASGPKC-PVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RIVRAFL+EEQKIVK
Sbjct: 87 VRERIVRAFLVEEQKIVK 104
Score = 50.0 bits (114), Expect = 8e-07
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRL +R R SY TKSNQ RIV+TPG L K PK V +
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGK 49
>At3g02500.1 68416.m00238 expressed protein
Length = 278
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 67 TTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQ 168
T +Q + K KK + +G ++W M + PR+S+
Sbjct: 231 TKEIQEEKKEKKKRRGSGFSSWIRKMQRQPRKSK 264
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 60 SGDDCRTTQNQIKEE**GHRAGRLVYQYVKKPKKIPRLWSMQEQTPLAIQPA 215
SG R + +K R+ RL Q ++KPK P+ ++ QT + +PA
Sbjct: 16 SGGSSRNLELAVKSSEGARRSTRLRLQPLRKPKTSPKKKPVKLQTKMPKKPA 67
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 433 GFYLNLSXKIHFVAFFADLVLACCA--LRTFTIFCSSIKK 320
GF +S I VAFF V C A + F + SS+KK
Sbjct: 842 GFLYGISFFITIVAFFGSWVYVCLADLVSLFAHYSSSVKK 881
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 61 QATTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQL 216
+ T + H + + + K L WF+ + + CG+ K+K+ L +L
Sbjct: 156 EGMTPLDHLPQGQGSEKLRELLRWFLQEQRKRSALEQCGKTKAKMELLEDEL 207
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 56 TFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQED 163
+FR+ +S NTK + RRI+ P +P G+ V Q Q D
Sbjct: 130 SFRKAISENTKESFRRIISEP-FP-GVLVFQMFQPD 163
>At5g07110.1 68418.m00810 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 216
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 192 FALALTTALGSSWAF*HTDKPSGQPGVL 109
FAL L +L +SW F + +P+ QP V+
Sbjct: 97 FALFLLASLAASWLFLYFFRPADQPLVI 124
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 194 SLLLH*PQPWDLLGLFDILINQAASPVSLLF-FFDLILCC 78
+LL H P W + F + N AA +S+ F F+ +IL C
Sbjct: 187 TLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSC 226
>At1g12260.1 68414.m01418 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 395
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 97 KKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQLDL 222
+ N+KDT A + + K P+R+ G+ + S Q+DL
Sbjct: 352 QNNAKDTSNAEYQVDEEKDPKRASDMGEEYTASTSSSCQIDL 393
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,242,910
Number of Sequences: 28952
Number of extensions: 157353
Number of successful extensions: 447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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