Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E11
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)                  29   2.5  
SB_5626| Best HMM Match : 7kD_coat (HMM E-Value=6.9)                   29   3.3  
SB_47989| Best HMM Match : Filament (HMM E-Value=0.27)                 29   4.4  
SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)
          Length = 329

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 388 SWLHITGTIKSTKLRMR---PTIAIEARVLRSNNQMRRY 281
           S++ + G IK  KL++R   PT++ E  ++ S   ++RY
Sbjct: 191 SYIQVYGVIKKHKLQIRAMAPTVSTELEIITSPRNIKRY 229


>SB_5626| Best HMM Match : 7kD_coat (HMM E-Value=6.9)
          Length = 69

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 17  LLIYXKKKSNCIAY*VFNNE*QEQLINGRQL 109
           +L Y    SNC+ Y +FNN+ ++ LI   +L
Sbjct: 35  VLTYMNSASNCLIYGIFNNDFRKALITSIKL 65


>SB_47989| Best HMM Match : Filament (HMM E-Value=0.27)
          Length = 366

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 628 QSSTTVDNKYNRKMLLIEEDIQATVHNVLMEIV 530
           +S TT+      K+ L+E+D++ +++N+L  +V
Sbjct: 332 ESMTTLQKVLEAKLKLVEDDLKKSINNILRMVV 364


>SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 225 ILWEQQWHPCAIVGSMT---IMYLLIWLLDLNTLASIAIVGLIL 347
           +L+E   HP  I+ ++    +  LL  L+  N L  IAI+G+IL
Sbjct: 127 VLYESYIHPITILSTLPSAGVGALLALLISGNELGLIAIIGIIL 170


>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 523 CITLSPSVHCVL*LGYPLLLTT--FSCCI 603
           C+T++   HCV   GYP  +T    +CC+
Sbjct: 496 CVTMNGCAHCVTMNGYPRCVTMNGCTCCV 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,987,622
Number of Sequences: 59808
Number of extensions: 373376
Number of successful extensions: 916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)