Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E11
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein con...    31   0.88 
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At4g33530.1 68417.m04765 potassium transporter family protein si...    28   6.2  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    28   6.2  
At5g45380.1 68418.m05577 sodium:solute symporter family protein ...    27   8.2  

>At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein
           contains Pfam domain PF05817: Ribophorin II (RPN2)
          Length = 691

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/34 (41%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
 Frame = +3

Query: 261 VGSMTIMYLLIWL-LDL-NTLASIAIVGLILNFV 356
           +G++ ++Y+L WL LDL  TL +++++G+ L FV
Sbjct: 640 IGAVLLLYVLFWLKLDLFTTLKALSLLGVFLLFV 673


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 300  LDLNTLASIAIVGLILNFVDFMVPVICNQL 389
            ++L+TLA   I  ++LNF  F     CN L
Sbjct: 3959 VELSTLAGSVIEAILLNFAGFYSTAFCNTL 3988


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 270 MTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSW 407
           +T++ LLIW  ++  ++  AIV LI+  V F    +C+ +    SW
Sbjct: 517 VTLIMLLIWQTNIIVVSMFAIVSLIVELVFF--SSVCSSV-ADGSW 559


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 510 YLVGNRMNGCKSPIYCSLLQCXYKFLQMSSRVVLSK 403
           YL  +  +GC S  +C +L C  K  Q+S+ + L K
Sbjct: 446 YLHRDNHDGCDSCPFCLVLPCLMKLQQISNHLELIK 481


>At5g45380.1 68418.m05577 sodium:solute symporter family protein
           contains Pfam profile: PF00474 sodium:solute symporter
           family
          Length = 694

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 150 QEQQVRKVKRTLXGWRVALLSLKSVILWEQQWHPCAIVGSMTIMYLLIWLLDLNTLASIA 329
           +E+++R+ K  +  W + + ++  V++W     P  +       +  I  +   T+ SI 
Sbjct: 571 REEKLRRAKAWIVKWGL-VFTILIVVIWPVLSLPARVFSRGYFWFWAIVAIAWGTIGSIV 629

Query: 330 IVGLIL 347
           I+GL L
Sbjct: 630 IIGLPL 635


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,746
Number of Sequences: 28952
Number of extensions: 254667
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)