Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E05
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 81 6e-16
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 31 1.1
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.9
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 29 3.3
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06) 29 4.4
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_31606| Best HMM Match : TP2 (HMM E-Value=1.3) 28 7.6
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 28 7.6
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 81.4 bits (192), Expect = 6e-16
Identities = 38/69 (55%), Positives = 52/69 (75%)
Frame = +3
Query: 447 AYPENPADFIPLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVVQNNLXFVVGLPV 626
AY E+PA + PLSQ+++ +I + K ++ +R+ K E+R+ LANVRVVQ NL FVVGL
Sbjct: 98 AYSEDPAVYTPLSQDEIQSIIRERKHKDTQRKQKLTENRKHLANVRVVQKNLVFVVGLTQ 157
Query: 627 RLADPEILK 653
RLADPE+LK
Sbjct: 158 RLADPELLK 166
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 349 PLLPVYMWIPNMSVSLESYSRRRXRPLPTLVGRHTQKTRQTSFLSVKSRWQR*XRTXKPA 528
P+ + W+ +VS S + R LP+L K R TS LSV S + + T P+
Sbjct: 1259 PVNSILFWLTTTTVSYPSLHKSRTPSLPSLFSSF-HKARTTSLLSVFSSFHKSRTTSLPS 1317
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 434 RLSEGIPRKPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRR 613
+LS+ I PG S+ +GG+DK + P QDA+ ++ +R S R V+R
Sbjct: 686 KLSDKI--NPGGTASAVRYSGGTDKSTKVRPCQSRIAQDAQRSSFSRGPSERDAVNAVKR 743
Query: 614 G 616
G
Sbjct: 744 G 744
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 370 WIPNMSVSLESYSRRRXRPLPTLVGRHTQKTRQTSFLSVK 489
W+ ++S+ +E Y RR RP P V R R T+ + V+
Sbjct: 2368 WVNHISMRIELYGRRVGRPAPPPVPRPPPTIRATTGVRVR 2407
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 434 RLSEGIPRKPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRR 613
+L+ G P + RL +S+ DK G+ P S ++ +RER R E+P R
Sbjct: 568 KLANGFPDERERL-KRRSQGRPDDKEGRERPGRERS-RERHGRERSRERPRSRERPRSRE 625
Query: 614 GPARQTRRP 640
R+ RP
Sbjct: 626 RSDRRDERP 634
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 449 IPRKPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPX-VRRGPAR 625
+ RKPG++ R + K G+ + + TS + R SR T +P V R P R
Sbjct: 164 VTRKPGQVTRKPGRV--TRKPGRVTLK--TSRVIRKPGRVTRRTSRVTRKPGRVTRKPGR 219
Query: 626 QTRRPG 643
TR+PG
Sbjct: 220 VTRKPG 225
>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
Length = 956
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 446 GIPRKPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARE 577
G PR PG S Q R G G+ + Q R C R+
Sbjct: 144 GAPRGPGNKGSDQQRGSGPSAFGKSTQPPENQQQTPRCRWCERQ 187
>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 273 VSAESXWRXTGGMSTMYGTLGKWTTSTSTRVH 368
+S+E R G T GTLG+ +T + RVH
Sbjct: 619 ISSEGSGRGNKGRVTSNGTLGRGSTKMNGRVH 650
>SB_31606| Best HMM Match : TP2 (HMM E-Value=1.3)
Length = 135
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 325 EPLASGRPPLLPVYMWIPNMSVSLESYSRRRXRPLPTLVGRHTQKTRQTSFL 480
EPL S R +P P +S ++Y + LP RH++ +T++L
Sbjct: 75 EPLISSRKLSIPDQNTEPLISSRKQAYQIKTQNHLPKARNRHSRSKHRTAYL 126
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 379 LVSTCTRVEVEVVHLPRVPYIVDIPP 302
L+S+CT + +E +H P I+ PP
Sbjct: 857 LLSSCTYIRIEALHCPNCEEILKEPP 882
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,883
Number of Sequences: 59808
Number of extensions: 349895
Number of successful extensions: 1327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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