Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12d07f
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038092-1|AAH38092.1| 161|Homo sapiens ATP synthase, H+ transp... 130 3e-30
AF087135-1|AAC36338.1| 161|Homo sapiens F1FO-type ATPase subuni... 130 3e-30
BC032245-1|AAH32245.1| 137|Homo sapiens ATP synthase, H+ transp... 93 9e-19
AF061735-1|AAG43146.1| 137|Homo sapiens My032 protein protein. 93 9e-19
BC029392-1|AAH29392.1| 102|Homo sapiens ATP5H protein protein. 79 1e-14
AF402000-1|AAM73764.1| 2542|Homo sapiens talin 2 protein. 33 0.81
AB002318-1|BAA20778.2| 1933|Homo sapiens KIAA0320 protein. 33 0.81
M29696-1|AAA59157.1| 459|Homo sapiens IL7R protein. 33 1.1
BC069999-1|AAH69999.1| 459|Homo sapiens interleukin 7 receptor ... 33 1.1
BC067540-1|AAH67540.1| 459|Homo sapiens interleukin 7 receptor ... 33 1.1
BC067539-1|AAH67539.1| 459|Homo sapiens interleukin 7 receptor ... 33 1.1
BC067538-1|AAH67538.1| 459|Homo sapiens interleukin 7 receptor ... 33 1.1
BC067537-1|AAH67537.1| 459|Homo sapiens interleukin 7 receptor,... 33 1.1
AY449709-1|AAR08908.1| 459|Homo sapiens interleukin 7 receptor ... 33 1.1
AF043129-1|AAC83204.1| 459|Homo sapiens interleukin-7 receptor ... 33 1.1
Y12815-1|CAA73346.1| 384|Homo sapiens chemokine receptor D6 pro... 32 1.4
U94888-1|AAB97728.1| 384|Homo sapiens CC-chemokine-binding rece... 32 1.4
BT006800-1|AAP35446.1| 384|Homo sapiens chemokine binding prote... 32 1.4
BC112045-1|AAI12046.1| 384|Homo sapiens chemokine binding prote... 32 1.4
BC101629-1|AAI01630.1| 384|Homo sapiens chemokine binding prote... 32 1.4
BC069243-1|AAH69243.1| 1215|Homo sapiens HDAC6 protein protein. 32 1.4
BC020558-1|AAH20558.1| 384|Homo sapiens CCBP2 protein protein. 32 1.4
BC013737-1|AAH13737.1| 1063|Homo sapiens HDAC6 protein protein. 32 1.4
BC011631-1|AAH11631.1| 384|Homo sapiens chemokine binding prote... 32 1.4
BC008816-1|AAH08816.1| 384|Homo sapiens chemokine binding prote... 32 1.4
AY262687-1|AAP20651.1| 384|Homo sapiens chemokine-binding prote... 32 1.4
AK127118-1|BAC86838.1| 632|Homo sapiens protein ( Homo sapiens ... 32 1.4
AJ011972-1|CAA09893.1| 1215|Homo sapiens histone deacetylase-lik... 32 1.4
AF481959-1|AAP42156.1| 384|Homo sapiens chemokine receptor D6 p... 32 1.4
AF174499-1|AAF36540.1| 1066|Homo sapiens GR AF-1 specific histon... 32 1.4
AF132609-1|AAD29048.1| 1215|Homo sapiens histone deacetylase 6 p... 32 1.4
AB020708-1|BAA74924.2| 1233|Homo sapiens KIAA0901 protein protein. 32 1.4
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 31 4.3
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 31 4.3
X86371-1|CAA60130.1| 1057|Homo sapiens hugl protein. 29 9.9
D50550-1|BAA19516.1| 1032|Homo sapiens LLGL protein. 29 9.9
BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein. 29 9.9
AF242456-1|AAL90444.1| 691|Homo sapiens interleukin 13 receptor... 29 9.9
AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein. 29 9.9
AC012485-2|AAX88977.1| 691|Homo sapiens unknown protein. 29 9.9
>BC038092-1|AAH38092.1| 161|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit d
protein.
Length = 161
Score = 130 bits (315), Expect = 3e-30
Identities = 61/159 (38%), Positives = 94/159 (59%)
Frame = +2
Query: 65 KRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPI 244
++++ ++W A AE +P QKA ++ K ++ R+ A P PP I+WA YK V
Sbjct: 4 RKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAK 63
Query: 245 PGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 424
G+VD F+K++ ALK+P P D TA V+++ + + ++ S A I Y+KE+ K
Sbjct: 64 AGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMK 123
Query: 425 ALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQL 541
L+P+DQMT+ED +A P+ LD K P +WPH P E L
Sbjct: 124 NLIPFDQMTIEDLNEAFPETKLDKKKYP-YWPHQPIENL 161
>AF087135-1|AAC36338.1| 161|Homo sapiens F1FO-type ATPase subunit d
protein.
Length = 161
Score = 130 bits (315), Expect = 3e-30
Identities = 61/159 (38%), Positives = 94/159 (59%)
Frame = +2
Query: 65 KRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPI 244
++++ ++W A AE +P QKA ++ K ++ R+ A P PP I+WA YK V
Sbjct: 4 RKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAK 63
Query: 245 PGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 424
G+VD F+K++ ALK+P P D TA V+++ + + ++ S A I Y+KE+ K
Sbjct: 64 AGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMK 123
Query: 425 ALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQL 541
L+P+DQMT+ED +A P+ LD K P +WPH P E L
Sbjct: 124 NLIPFDQMTIEDLNEAFPETKLDKKKYP-YWPHQPIENL 161
>BC032245-1|AAH32245.1| 137|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit d
protein.
Length = 137
Score = 92.7 bits (220), Expect = 9e-19
Identities = 53/159 (33%), Positives = 82/159 (51%)
Frame = +2
Query: 65 KRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPI 244
++++ ++W A AE +P QKA ++ K ++ R+ A P PP I+WA YK V
Sbjct: 4 RKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAK 63
Query: 245 PGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 424
G+VD F+K+ ++ ++W + S A I Y+KE+ K
Sbjct: 64 AGLVDDFEKKVKSC--------------AEW----------VSLSKARIVEYEKEMEKMK 99
Query: 425 ALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQL 541
L+P+DQMT+ED +A P+ LD K P +WPH P E L
Sbjct: 100 NLIPFDQMTIEDLNEAFPETKLDKKKYP-YWPHQPIENL 137
>AF061735-1|AAG43146.1| 137|Homo sapiens My032 protein protein.
Length = 137
Score = 92.7 bits (220), Expect = 9e-19
Identities = 53/159 (33%), Positives = 82/159 (51%)
Frame = +2
Query: 65 KRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPI 244
++++ ++W A AE +P QKA ++ K ++ R+ A P PP I+WA YK V
Sbjct: 4 RKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAK 63
Query: 245 PGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATK 424
G+VD F+K+ ++ ++W + S A I Y+KE+ K
Sbjct: 64 AGLVDDFEKKVKSC--------------AEW----------VSLSKARIVEYEKEMEKMK 99
Query: 425 ALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQL 541
L+P+DQMT+ED +A P+ LD K P +WPH P E L
Sbjct: 100 NLIPFDQMTIEDLNEAFPETKLDKKKYP-YWPHQPIENL 137
>BC029392-1|AAH29392.1| 102|Homo sapiens ATP5H protein protein.
Length = 102
Score = 79.0 bits (186), Expect = 1e-14
Identities = 35/95 (36%), Positives = 57/95 (60%)
Frame = +2
Query: 65 KRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPI 244
++++ ++W A AE +P QKA ++ K ++ R+ A P PP I+WA YK V
Sbjct: 4 RKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKPNVAK 63
Query: 245 PGMVDTFQKQYEALKIPYPADTQTALVESQWNQVK 349
G+VD F+K++ ALK+P P D TA V+++ + K
Sbjct: 64 AGLVDDFEKKFNALKVPVPEDKYTAQVDAEKKKKK 98
>AF402000-1|AAM73764.1| 2542|Homo sapiens talin 2 protein.
Length = 2542
Score = 33.1 bits (72), Expect = 0.81
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 62 AKRISQSAVNWA-ALAERVPAEQKAHLAAFKIKSDNYLRRV--LANPPEPPKINWAVYKQ 232
A ++SQ A N A +LAE A QKAH A ++ D+ L V L N + K+ AV Q
Sbjct: 1019 AMQLSQCAKNLATSLAELRTASQKAHEACGPMEIDSALNTVQTLKNELQDAKMA-AVESQ 1077
Query: 233 AVPIPGMVDTFQK 271
P+PG +T +K
Sbjct: 1078 LKPLPG--ETLEK 1088
>AB002318-1|BAA20778.2| 1933|Homo sapiens KIAA0320 protein.
Length = 1933
Score = 33.1 bits (72), Expect = 0.81
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 62 AKRISQSAVNWA-ALAERVPAEQKAHLAAFKIKSDNYLRRV--LANPPEPPKINWAVYKQ 232
A ++SQ A N A +LAE A QKAH A ++ D+ L V L N + K+ AV Q
Sbjct: 410 AMQLSQCAKNLATSLAELRTASQKAHEACGPMEIDSALNTVQTLKNELQDAKMA-AVESQ 468
Query: 233 AVPIPGMVDTFQK 271
P+PG +T +K
Sbjct: 469 LKPLPG--ETLEK 479
>M29696-1|AAA59157.1| 459|Homo sapiens IL7R protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>BC069999-1|AAH69999.1| 459|Homo sapiens interleukin 7 receptor
protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>BC067540-1|AAH67540.1| 459|Homo sapiens interleukin 7 receptor
protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>BC067539-1|AAH67539.1| 459|Homo sapiens interleukin 7 receptor
protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>BC067538-1|AAH67538.1| 459|Homo sapiens interleukin 7 receptor
protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>BC067537-1|AAH67537.1| 459|Homo sapiens interleukin 7 receptor,
precursor protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>AY449709-1|AAR08908.1| 459|Homo sapiens interleukin 7 receptor
protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>AF043129-1|AAC83204.1| 459|Homo sapiens interleukin-7 receptor
precursor protein.
Length = 459
Score = 32.7 bits (71), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 WKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSLLQLQLH 593
WK + PI+ WP +P + H +K ++ N S L Q+H
Sbjct: 264 WKKRIKPIV-WPSLPDHKKTLEHLCKKPRKNLNVSFNPESFLDCQIH 309
>Y12815-1|CAA73346.1| 384|Homo sapiens chemokine receptor D6
protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>U94888-1|AAB97728.1| 384|Homo sapiens CC-chemokine-binding
receptor JAB61 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BT006800-1|AAP35446.1| 384|Homo sapiens chemokine binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BC112045-1|AAI12046.1| 384|Homo sapiens chemokine binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BC101629-1|AAI01630.1| 384|Homo sapiens chemokine binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BC069243-1|AAH69243.1| 1215|Homo sapiens HDAC6 protein protein.
Length = 1215
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 463 PWEPPVLPILTWPVLQSRT 481
>BC020558-1|AAH20558.1| 384|Homo sapiens CCBP2 protein protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BC013737-1|AAH13737.1| 1063|Homo sapiens HDAC6 protein protein.
Length = 1063
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 311 PWEPPVLPILTWPVLQSRT 329
>BC011631-1|AAH11631.1| 384|Homo sapiens chemokine binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>BC008816-1|AAH08816.1| 384|Homo sapiens chemokine binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>AY262687-1|AAP20651.1| 384|Homo sapiens chemokine-binding protein
2 protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>AK127118-1|BAC86838.1| 632|Homo sapiens protein ( Homo sapiens
cDNA FLJ45175 fis, clone BRAWH3046424, highly similar
to Histone deacetylase 6. ).
Length = 632
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 111 PWEPPVLPILTWPVLQSRT 129
>AJ011972-1|CAA09893.1| 1215|Homo sapiens histone deacetylase-like
protein protein.
Length = 1215
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 463 PWEPPVLPILTWPVLQSRT 481
>AF481959-1|AAP42156.1| 384|Homo sapiens chemokine receptor D6
protein.
Length = 384
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 388 VGIGLLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLLECVYHSRNRYS-LFVHSPV 212
V I LL+ + +L L+ L F+ +SV+W W F SF+ + ++ N YS +F S +
Sbjct: 81 VEIYLLNLAISNLLFLVTLPFWG--ISVAWHWVFGSFLCKMVSTLYTINFYSGIFFISCM 138
Query: 211 NLGRF 197
+L ++
Sbjct: 139 SLDKY 143
>AF174499-1|AAF36540.1| 1066|Homo sapiens GR AF-1 specific histone
deacetylase protein.
Length = 1066
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 314 PWEPPVLPILTWPVLTSRT 332
>AF132609-1|AAD29048.1| 1215|Homo sapiens histone deacetylase 6
protein.
Length = 1215
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 463 PWEPPVLPILTWPVLQSRT 481
>AB020708-1|BAA74924.2| 1233|Homo sapiens KIAA0901 protein protein.
Length = 1233
Score = 32.3 bits (70), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 450 PWKTSMMPILTWPLIPSRS 506
PW+ ++PILTWP++ SR+
Sbjct: 481 PWEPPVLPILTWPVLQSRT 499
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 4.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 330 RSGIKSRMPS---TRLSKSPMPTLHPTKKKSMQPRPYCRM-TR*PWKTSMMPILTWPLIP 497
+SG + R PS TR +SP P P ++++ P P R + P + S P P I
Sbjct: 551 KSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 610
Query: 498 SRSQPSGHTLRKSSSTMSTQRNKLS 572
R PS R+++S + + S
Sbjct: 611 RRYSPSPPPKRRTASPPPPPKRRAS 635
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.7 bits (66), Expect = 4.3
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 330 RSGIKSRMPS---TRLSKSPMPTLHPTKKKSMQPRPYCRM-TR*PWKTSMMPILTWPLIP 497
+SG + R PS TR +SP P P ++++ P P R + P + S P P I
Sbjct: 551 KSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 610
Query: 498 SRSQPSGHTLRKSSSTMSTQRNKLS 572
R PS R+++S + + S
Sbjct: 611 RRYSPSPPPKRRTASPPPPPKRRAS 635
>X86371-1|CAA60130.1| 1057|Homo sapiens hugl protein.
Length = 1057
Score = 29.5 bits (63), Expect = 9.9
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = -3
Query: 411 ISFW*DAMLALDSWINASMAFLT*FHCDSTSAV*VSA--GYGIFRASYCFWNVSTIPGIG 238
+ FW + +AL S A L C+ + ++ +A + FR CF S P +G
Sbjct: 458 VRFWDASGVALRPLYKLSTAGLFQTDCEHSDSLAQAAEDDWPPFRKVGCFDPYSDDPRLG 517
Query: 237 TA----CLYTAQLILGGSGGLASTLRR*LSD 157
C YTAQ+++ G+ G L LSD
Sbjct: 518 VQKVALCKYTAQMVVAGTAGQVLVLE--LSD 546
>D50550-1|BAA19516.1| 1032|Homo sapiens LLGL protein.
Length = 1032
Score = 29.5 bits (63), Expect = 9.9
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Frame = -3
Query: 411 ISFW*DAMLALDSWINASMAFLT*FHCDSTSAV*VSA--GYGIFRASYCFWNVSTIPGIG 238
+ FW + +AL S A L C+ ++ +A + FR CF S P +G
Sbjct: 457 VRFWDASGVALRPLYKLSTAGLFQTDCEHADSLAQAAEDDWPPFRKVGCFDPYSDDPRLG 516
Query: 237 TA----CLYTAQLILGGSGGLASTLRR*LSDFILKAA 139
C YTAQ+++ G+ G L LSD ++ A
Sbjct: 517 VQKVALCKYTAQMVVAGTAGQVLVLE--LSDVPVEQA 551
>BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein.
Length = 625
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 QKQYEALK-IPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYD 442
+K YE L+ P P + + +L ES W + K+ + I++ +I + K ++ Y
Sbjct: 482 KKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDYI 541
Query: 443 Q 445
Q
Sbjct: 542 Q 542
>AF242456-1|AAL90444.1| 691|Homo sapiens interleukin 13 receptor
alpha 1-binding protein-1 protein.
Length = 691
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 QKQYEALK-IPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYD 442
+K YE L+ P P + + +L ES W + K+ + I++ +I + K ++ Y
Sbjct: 548 KKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDYI 607
Query: 443 Q 445
Q
Sbjct: 608 Q 608
>AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein.
Length = 625
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 QKQYEALK-IPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYD 442
+K YE L+ P P + + +L ES W + K+ + I++ +I + K ++ Y
Sbjct: 482 KKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDYI 541
Query: 443 Q 445
Q
Sbjct: 542 Q 542
>AC012485-2|AAX88977.1| 691|Homo sapiens unknown protein.
Length = 691
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 QKQYEALK-IPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYD 442
+K YE L+ P P + + +L ES W + K+ + I++ +I + K ++ Y
Sbjct: 548 KKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDYI 607
Query: 443 Q 445
Q
Sbjct: 608 Q 608
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,784,462
Number of Sequences: 237096
Number of extensions: 2355215
Number of successful extensions: 5778
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5770
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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