Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c01f
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 33 0.23
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 31 0.70
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 31 0.92
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 31 0.92
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 30 1.2
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 30 1.6
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971... 29 2.1
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 29 2.8
03_05_0437 - 24293236-24294120 29 2.8
08_02_0484 + 17665714-17666877 29 3.7
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 29 3.7
08_01_0336 - 2993322-2993711 28 4.9
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444... 28 4.9
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 4.9
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983... 28 6.5
01_06_1802 + 39978634-39978880,39979016-39979431 28 6.5
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211... 27 8.6
01_01_0685 + 5257336-5257653,5259021-5259073,5259144-5259240,525... 27 8.6
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 QIPEYECVAQSGPQHQATFEFRC-KALGESVSASARSKREA 213
++ E E +Q P+ T RC K+ G+ VSA AR+KR+A
Sbjct: 292 RVEELESSSQPSPRPMETTRRRCCKSTGKKVSAGARAKRKA 332
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 465 VQRARQHRPALARRQRHHQATGA-TKSRSRPL 557
V +Q P L RR RH +TG+ T SRS P+
Sbjct: 481 VSEVKQVLPGLIRRHRHSDSTGSTTSSRSNPM 512
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 345 FALGALASRLVTMRGLCKFSSKWWGYT 265
F +LA+R V++ G +FS WW YT
Sbjct: 474 FLYASLAARAVSLFGGVRFSLAWWAYT 500
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +1
Query: 100 PEYECVAQSGPQHQATFEFRC--------KALGESVSASARSKREAKQEAARAMLLCLST 255
PE++ + GP H F ++ L E S K+ A++ AA+ L CL
Sbjct: 1486 PEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKKAAQEHAAQGALWCLKQ 1545
Query: 256 IGH 264
+GH
Sbjct: 1546 LGH 1548
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Frame = +1
Query: 259 GHRVPPPFATEFTQ-PSHSNQSAGE-CSEGKAPTVDSRSYVALLKELCEEYKLPGVEYAL 432
G P AT+ + PS + + + + G +RS+ L ELC E+ L
Sbjct: 1434 GRNNQPKLATQSGRLPSEATEKSNKKVYHGDMVHKTARSF---LFELCAANYWKPPEFKL 1490
Query: 433 VADTGPAHMRLFSVRASIGLHSRDAS-------GTTKRQARQKAAADLYLFLRETLSRL 588
+ GP+H+R F+ + + + A+ G +++A Q+ AA L+ + L L
Sbjct: 1491 CKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKKAAQEHAAQGALWCLKQLGHL 1549
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 175 ESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF----ATEFTQPSHSNQSAGECSEG 342
ES+ AR+K EAK + + A + + GH VP P FT P + + C
Sbjct: 313 ESMERLARAKVEAKSKGSEACMELVEADGHPVPGPVWHAAVRVFTYPHYCS-----CFM- 366
Query: 343 KAPTVDSRSYVALL 384
K PT ++RS L+
Sbjct: 367 KLPTAEARSVYILM 380
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 247 LSTIGHRVPPPFATEFTQPSHS-NQSAGECSEGKAPTVDSRSY 372
+ST G PPP+AT + PS S Q + + G+A VD RS+
Sbjct: 502 VSTSG--TPPPYATAYATPSFSPAQLSSPSNIGRALLVDRRSH 542
>11_03_0085 -
9717360-9717390,9717478-9717603,9718600-9718666,
9718770-9718831,9718904-9719094,9720133-9720268,
9720760-9720851,9721231-9721413
Length = 295
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 144 GLVLGP*LSNTFILWNLSKFHHHFLQYCYGS--FHLVVRFLKLKTKS 10
G+++G +TF ++ +S + FL +C S +HL V F KL+ +
Sbjct: 68 GVLIGDEFGDTFAVFVVSPYDLKFLDFCLESCQYHLNVSFHKLRNST 114
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 MKTPITVLQEMMMKLGQIPEYECV-AQSGPQHQATFEFRCKALGESVSASARSKREAKQE 222
+K I +++E+ + + +P+ E V A + Q T EF C+ L S S+ + E
Sbjct: 639 LKKQIDIVEELDLGMSCVPDGEYVLAPTNYSRQQTTEFSCQELVPSNSSILPEQSETNGV 698
Query: 223 AARAMLLCLS 252
+ + C S
Sbjct: 699 GLKGTIDCFS 708
>03_05_0437 - 24293236-24294120
Length = 294
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 217 ALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSS 80
A LPSL+ + +R THL+ S +P V A H L ++V+S
Sbjct: 142 ARLPSLLPRWRRLTHLELDSKPSSFPAVAAALALHCPDLAVLRVTS 187
>08_02_0484 + 17665714-17666877
Length = 387
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 427 ALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYLFLRETLSRLT 591
A A GP +R+ S LHS D G + +A D+Y+F L LT
Sbjct: 214 AAAAARGPCGVRVSDYGLSTFLHSDDGDGDDHGRLDARAENDVYMFGAVLLHLLT 268
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 205 SLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFLAVLL 59
++++++++ + L+P+S P V TE H E+V SF AV L
Sbjct: 458 NILLRRRKYSSLRPFSTIAPRPYVSKSTEPHNDVDEAVCQQGSFAAVTL 506
>08_01_0336 - 2993322-2993711
Length = 129
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 184 SASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSN--QSAGECSEGKAPTV 357
SAS +R A E+ + + S G R+P E + P N AG PT
Sbjct: 42 SASKAVRRPASVESDQPEEVTASRRGERLPDWLVLELSSPQEENPISRAGGVLPRVLPT- 100
Query: 358 DSRSYVALLKELCEEYKLPGVE 423
R V L+++L +LP +E
Sbjct: 101 -PRKLVRLVRQLHRSEELPELE 121
>07_03_1083 -
23840789-23841634,23841991-23842017,23844401-23844442,
23844882-23845002,23845824-23846062
Length = 424
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 271 PPPFATEFTQPSHSNQSAGECSEGK 345
PPP A EF P+ + EC GK
Sbjct: 60 PPPAAEEFAMPAALRNAVRECGTGK 84
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +1
Query: 31 KSNNKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKA-------LGESVSA 189
K+ +M T T+ + + +P+Y CV + GP H F + + E +
Sbjct: 1791 KNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGE 1850
Query: 190 SARSKREAKQEAARAMLLCLS 252
S ++AK AA +L L+
Sbjct: 1851 PMPSVKKAKDSAAVLLLELLN 1871
>08_02_0519 -
18097509-18097726,18097803-18097967,18098095-18098305,
18099151-18099419,18100915-18101017
Length = 321
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 67 LQEMMMKLG-QIPEYECVAQSGPQHQATFEFRCKALGESVSAS--ARSKREAKQEAAR 231
LQE + + Q+P Y C G HQ F+ GE S++ R ++A+Q+AA+
Sbjct: 43 LQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAAK 99
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGES---VSASARSKREAKQEAARA 234
V++ + +G P+ GP + FRC+ L + V + R A ARA
Sbjct: 110 VVERVFYMVGSPPDVITATGEGPGGRTVAGFRCRRLTSTRTLVDGEDAAARAAAISGARA 169
Query: 235 MLLC 246
+++C
Sbjct: 170 LVMC 173
>02_01_0315 -
2111095-2111241,2111496-2111579,2111803-2111883,
2112133-2112310,2112447-2112623,2112688-2112734,
2112845-2112901,2113339-2113437,2113696-2113818,
2113895-2114017,2114241-2114264,2115096-2115209,
2115315-2115503,2115691-2115857,2116846-2116930,
2117698-2117778,2118239-2118424,2119266-2119314,
2119777-2119810,2120087-2120153,2120198-2120419
Length = 777
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 196 VQKQRQTHLKPYSGTQMW 143
+Q+Q H+K Y+G+Q+W
Sbjct: 397 MQQQNHNHMKGYNGSQLW 414
>01_01_0685 +
5257336-5257653,5259021-5259073,5259144-5259240,
5259383-5259481,5259573-5259731
Length = 241
Score = 27.5 bits (58), Expect = 8.6
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Frame = +1
Query: 118 AQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFT 297
++SG + + + K LGE VS K+EAK +LLC +T R+ + +
Sbjct: 39 SESGGKRRRGRRGKQKGLGEVVSV--HEKKEAKTSPFPLLLLCRAT-RRRITEVYDEMYQ 95
Query: 298 QPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSV- 474
G+ E VD+R+ + E+ + + ++ AL+++ P R S
Sbjct: 96 IVRAKRNDTGKVHEFINCLVDARNELLHKSEMVQ--RSCRIKKALLSN--PCSRRANSYD 151
Query: 475 RASIGLHSRDASGTTKRQARQKAAADLYLFLRETL 579
R +H +A R K AD+Y +++E L
Sbjct: 152 RLCEQVHKLEA-----EHKRLKKDADIYNYIQEQL 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,461
Number of Sequences: 37544
Number of extensions: 290961
Number of successful extensions: 1150
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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