Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m22f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   171   9e-44
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.0  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   4.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.2  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   6.9  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   6.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.1  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  171 bits (415), Expect = 9e-44
 Identities = 86/155 (55%), Positives = 111/155 (71%)
 Frame = +1

Query: 118 QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 297
           Q R+L +HEYIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVLAGGRGK
Sbjct: 19  QKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRGK 78

Query: 298 GTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYY 477
           G F +GL+GGVR V     A   A +M+   L+T+QTG AG+ICN+V V ERKF R+EYY
Sbjct: 79  GQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYVCERKFIRKEYY 138

Query: 478 VAIMMERSFNGPVIIASSQGGVXIEDVAAENPDAI 582
            AI+M+R    P+I+AS QGGV IE VAAENP AI
Sbjct: 139 FAILMDRENQCPMIVASDQGGVDIETVAAENPSAI 173


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 368  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 279
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 152 VILYYGTMEFLYPNLMWPKP 211
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 160  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 285
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 163 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 312
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 85  ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL-NTKDIV 261
           ASS+    S+ Q + +  HE   Y L+R H  P  +    K ++EA +   ++   K++V
Sbjct: 297 ASSSASSSSRTQAKSIPSHERTHYRLIRQH--PELEHVWEKLEEEAPREVKQIEQPKELV 354

Query: 262 L 264
           L
Sbjct: 355 L 355


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 118 QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 297
           +VR +NV + +  + L  HG+   +F+   TKD  + F    N    V+  + L   R +
Sbjct: 679 RVRVINVTDLMVLSSLHPHGMNPAEFDSLFTKDRHVHF----NYHGYVMDLKALLFDRIQ 734

Query: 298 GT 303
           GT
Sbjct: 735 GT 736


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 495 FHHNCHVVFPAWELPLCDHDHVANS 421
           +H  CH+++  W + LC    +  S
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSIETS 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,479
Number of Sequences: 5004
Number of extensions: 55724
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)