Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11k01f
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    29   1.8  
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 TRPKQHNRYIYCIKLNKN 162
           TRPKQH   +YC+  N N
Sbjct: 408 TRPKQHRGSVYCLSFNPN 425


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 TRPKQHNRYIYCIKLNKN 162
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 TRPKQHNRYIYCIKLNKN 162
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +3

Query: 246 MVINSTWIQDCWGGSRESGCCSYV-IHWECL------SCQYYCTS 359
           +++N  W+      S E+G   +  I +ECL       CQYYCTS
Sbjct: 104 LLVNDPWVHKTI--SNENGVSVFTSIRFECLPSFYGPKCQYYCTS 146


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 177 HVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHS 43
           + C    V LNTV I +VLFRS  ++ G +  + T+  V + F++
Sbjct: 15  YFCVGCSVFLNTVLIILVLFRSPHSL-GFYKYLMTYIYVFDLFYA 58


>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 393 RKNMKGLITKTVTINLY*KKGLEQYFYCIFLFVLWWKICLS 515
           +  M G+IT  +T+ +   K + + F CI LF+ +  I L+
Sbjct: 67  KSTMMGIITLPITLIVVTYKAIRKMFRCISLFLRFSPILLT 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,046
Number of Sequences: 27780
Number of extensions: 264225
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)