Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j09f
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    98   5e-22
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    31   0.063
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    28   0.59 
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   3.1  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   4.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.5  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   7.3  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    24   9.6  

>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 41/90 (45%), Positives = 63/90 (70%)
 Frame = +2

Query: 47  LNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWF 226
           +N   R   L    ++ W +Q     + K F+FKNF EA+GFM+ VAL A++++HHPEW 
Sbjct: 1   MNTSARLLALVSKSKNNWILQQGDTKLFKSFRFKNFIEAWGFMSCVALRAQQLNHHPEWT 60

Query: 227 NVYNKLQVTLSSHDVNGLSKRDIKMASFMD 316
           NVYNK+ +TL++HD  GL+++D+K+A F+D
Sbjct: 61  NVYNKVDITLTTHDTKGLTEKDLKLAEFID 90


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 31.5 bits (68), Expect = 0.063
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +2

Query: 74  LKPLLESGWKIQSNRDAIE------KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNVY 235
           LKPLL++ W+I  +  +++      K F   NF   +  ++  + L   +++   +FN+Y
Sbjct: 119 LKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLY 178

Query: 236 NKLQVTLSSHDVNGLSKRDI 295
               +T S H +N +  +DI
Sbjct: 179 ----LTNSPHIMNDIINKDI 194


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 5   VSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKE 136
           +S+    K++  DKL QE +  ELK + ES  K++   + +  +
Sbjct: 64  LSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDD 107


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 8   SSTSPSKRKMADKLNQEERTTELKPLLESGW 100
           S+   S++  AD L    + TELKP    GW
Sbjct: 43  SACYASEKDYADALKDATKCTELKPDWAKGW 73


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 41  DKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPE 220
           + L+Q+E  + L+ L+++  KI+S+    +   +F +       M R+  +    D    
Sbjct: 22  EHLDQDE--SFLRILIDTRKKIRSSYFKPQTFDEFVHCLARVRAMKRLVSICSNFDEEDN 79

Query: 221 WFNVYNKLQVTLSSH 265
           W  V+N L V   SH
Sbjct: 80  WNGVWNTLVVDGDSH 94


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 452  NLHNENIFINFLNITTTLLSKSHVYLFNKYYHTIVYQK 339
            ++H+E I     ++   L  +SH   F K Y T+V+ +
Sbjct: 1368 DVHSEIILDEIYSVPPNLDRESHSRPFGKKYDTVVFNR 1405


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 39  LINLIKRSAQLSSNLYWNLVGKFRATETQ*KRNFSSKILMK 161
           +INL K + ++  +LYWN    F +     +R ++   L K
Sbjct: 450 VINLAKLTNEICDSLYWNPSPSFESQVNSVRRIYARLELWK 490


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 443 NENIFI-NFLNITTTLLSKSHVYLFNKYYHTIVY 345
           N+NI + N+L  +TT+  ++HVY+    Y   V+
Sbjct: 26  NKNIPLKNWLRTSTTISKQAHVYVSEHDYSNGVF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,112
Number of Sequences: 5004
Number of extensions: 35318
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)