Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11h08f
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.42 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.55 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +1

Query: 157 QVPREYPDDEYYYAPKIQYYYDAPAVNVPEMHDQVQYPYYYD 282
           ++PR+Y   +     ++ Y+ +   +N+   H  + YP+  D
Sbjct: 180 EIPRDYTASDLDVEHRVAYWREDIGINLHHWHWHLVYPFEGD 221


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 297 ILSTWVVIIGVLDLVVHLRNIYSGSIVVILYLRSVVIFIIGVLPRYLSPQRP 142
           +L T V++   + + + + N+   S V     R V +  I VLPR+L  +RP
Sbjct: 303 LLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLIERP 354


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 121  KTYPMQGWPLWGQVPREYP 177
            K YP++  P W  V   YP
Sbjct: 1457 KDYPLRLGPCWHAVMTTYP 1475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,154
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)