Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o22f
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 192 2e-49
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 30 1.2
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 29 3.8
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 6.6
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 192 bits (468), Expect = 2e-49
Identities = 93/147 (63%), Positives = 112/147 (76%)
Frame = +2
Query: 131 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 310
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 311 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 490
DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122
Query: 491 NKATVNMLRIAEPYIAWGYPNLKSVRE 571
NKAT NMLRI +PYIA+GYPNLKSVRE
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRE 149
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 330 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 434
P +HA T P + N H +S S +T RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 486 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 307
RT PLF L C R TW P + + + L + +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353
Query: 306 LMRYSLTY--CSALLKIS 259
+ ++ L + CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 116 PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 289
P K KE SK + AV +S+LK + T ++ AI KKR + +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361
Query: 290 KEYRIKERDEIRLARQARNR 349
+ R R R R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 233 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 358
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 233 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 358
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 305 KERDEIRLARQARNRGNYYVP 367
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 323 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 436
RL R + R NYY+ + +AF + I + + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 543 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 421
P+ + + + +++V+L R N LF RSL SC RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,629
Number of Sequences: 59808
Number of extensions: 335851
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -