Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k04r
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 105 2e-23
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 105 2e-23
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 105 2e-23
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 105 4e-23
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 105 4e-23
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 103 2e-22
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 55 6e-08
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 54 1e-07
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 54 1e-07
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 53 2e-07
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 52 3e-07
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 52 3e-07
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 52 5e-07
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 52 5e-07
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 52 5e-07
At5g28740.1 68418.m03530 transcription-coupled DNA repair protei... 29 3.3
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 29 4.3
At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing pro... 28 5.7
At1g60940.2 68414.m06860 serine/threonine protein kinase, putati... 28 7.6
At1g60940.1 68414.m06859 serine/threonine protein kinase, putati... 28 7.6
At1g55620.2 68414.m06367 voltage-gated chloride channel family p... 28 7.6
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof... 27 10.0
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof... 27 10.0
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (253), Expect = 2e-23
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E DE E
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEE 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (253), Expect = 2e-23
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E DE E
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEE 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (253), Expect = 2e-23
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E DE E
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEE 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 105 bits (251), Expect = 4e-23
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E DE +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGED 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 105 bits (251), Expect = 4e-23
Identities = 47/61 (77%), Positives = 52/61 (85%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + + E DE +
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEEDEGED 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 103 bits (246), Expect = 2e-22
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = -2
Query: 741 QMGHKXDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
++ HK DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + E + +E +E
Sbjct: 390 RIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGGEGAEDDDEEGDE 449
Query: 561 Y 559
Y
Sbjct: 450 Y 450
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA DL A + Y++ V E E DEE E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVGEEEYEEDEEEE 442
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+T GE + E E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY-QDATAGEEEYEEE 438
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA DL A + Y++ D EGE D E E
Sbjct: 389 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADE-EGEYDVEEE 442
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+T E DE +E
Sbjct: 389 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-QDATADEEDEYDE 439
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA DL + + Y++ D EG EE+E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEGYEYEEDE 442
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV--GVDSTEGELDEEN-EY 559
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ EGE +EE EY
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEAEY 443
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E D E+E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDE 439
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + + E D E+E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDE 439
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = -2
Query: 717 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV--GVDSTEGELDEENE 562
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ EGE +E+ +
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEEDED 441
>At5g28740.1 68418.m03530 transcription-coupled DNA repair
protein-related similar to XAB2 (XPA-binding protein 2)
[Homo sapiens] GI:10566459
Length = 917
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 344 KKYVSDHDVVNTQTLIDNSIHKTYSIFNKIISLW 445
K Y + D+VNT+ + D ++ Y + + S+W
Sbjct: 431 KLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVW 464
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 696 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVLGRK 517
V W+ GE ME +F E +D EE +D E E DEE+E ++ +K
Sbjct: 292 VSWFTGEAMEAEDF-EIDDD--------EEDDIDEDEDEEDEEDEEDDDDEDEEESKTKK 342
Query: 516 EPN 508
+P+
Sbjct: 343 KPS 345
>At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 217
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 201 NHHLDLWR---IRSHLHLLIFTCTFKT 130
+H LD+WR IR +LH L+ + +F+T
Sbjct: 135 HHQLDIWRLVHIRHYLHPLLLSSSFET 161
>At1g60940.2 68414.m06860 serine/threonine protein kinase, putative
similar to serine/threonine-protein kinase ASK1 from
[Arabidopsis thaliana], SWISS-PROT:P43291
Length = 361
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 642 EDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVLG 523
ED E+D EE V+ E E DEE+EY +K + +G
Sbjct: 318 EDAEGKEEDAEEE-VEEVEEEEDEEDEYDKTVKQVHASMG 356
>At1g60940.1 68414.m06859 serine/threonine protein kinase, putative
similar to serine/threonine-protein kinase ASK1 from
[Arabidopsis thaliana], SWISS-PROT:P43291
Length = 361
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 642 EDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVLG 523
ED E+D EE V+ E E DEE+EY +K + +G
Sbjct: 318 EDAEGKEEDAEEE-VEEVEEEEDEEDEYDKTVKQVHASMG 356
>At1g55620.2 68414.m06367 voltage-gated chloride channel family
protein contains Pfam profiles PF00654: Voltage gated
chloride channel, PF00571: CBS domain
Length = 781
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 663 GEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 562
GE++E R L + + D EVG+ EG+LD E++
Sbjct: 7 GEYNEDRHLLRSTDGD--EVGIGGGEGDLDVESQ 38
>At3g09560.2 68416.m01136 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 904
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 624 EKDYEEVGVDSTEGELDEENE 562
++D E V +DST E+D++NE
Sbjct: 446 DQDSERVSIDSTREEVDKDNE 466
>At3g09560.1 68416.m01135 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 904
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 624 EKDYEEVGVDSTEGELDEENE 562
++D E V +DST E+D++NE
Sbjct: 446 DQDSERVSIDSTREEVDKDNE 466
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,214
Number of Sequences: 28952
Number of extensions: 287045
Number of successful extensions: 775
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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