Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k01r
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 132 2e-31
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 132 2e-31
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 132 2e-31
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 132 2e-31
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 132 2e-31
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 132 2e-31
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 131 4e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 131 4e-31
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 130 7e-31
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 69 4e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 69 4e-12
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 69 4e-12
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 69 4e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 69 4e-12
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 69 4e-12
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 5.6
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 27 9.8
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 132 bits (320), Expect = 2e-31
Identities = 59/64 (92%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 58/64 (90%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE
Sbjct: 363 KMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 422
Query: 555 YQQY 544
YQQY
Sbjct: 423 YQQY 426
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 58/64 (90%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+E
Sbjct: 363 KMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAE 422
Query: 555 YQQY 544
YQQY
Sbjct: 423 YQQY 426
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 131 bits (317), Expect = 4e-31
Identities = 58/64 (90%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+E
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 131 bits (317), Expect = 4e-31
Identities = 58/64 (90%), Positives = 64/64 (100%)
Frame = -3
Query: 735 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 556
KMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+E
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAE 421
Query: 555 YQQY 544
YQQY
Sbjct: 422 YQQY 425
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 130 bits (315), Expect = 7e-31
Identities = 58/63 (92%), Positives = 63/63 (100%)
Frame = -3
Query: 732 MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 553
MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY
Sbjct: 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Query: 552 QQY 544
QQY
Sbjct: 423 QQY 425
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = -3
Query: 729 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 550
A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 549 Q 547
+
Sbjct: 434 E 434
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 471 GLSCPRSPAPAPRQTLRPRRRWPPGTVGTRRQG 569
GLS PR +P PR+ L PRRR P + RR G
Sbjct: 225 GLS-PRRRSPLPRRGLSPRRR-SPDSPHRRRPG 255
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 271 LTTKGSSGMFIAVNSYPQRREPFS*ACARCCDTITQR 161
+ T SSG+F+AV++Y R FS + + D I QR
Sbjct: 160 MLTIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQR 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,649
Number of Sequences: 28952
Number of extensions: 218419
Number of successful extensions: 642
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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