Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08f
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06710.1 68416.m00794 expressed protein                             30   1.3  
At1g20340.1 68414.m02538 plastocyanin similar to plastocyanin GI...    29   2.2  
At1g10090.1 68414.m01137 expressed protein                             29   2.2  
At5g25320.1 68418.m03004 ACT domain-containing protein contains ...    28   3.9  
At1g70990.1 68414.m08190 proline-rich family protein                   27   9.0  
At1g67660.1 68414.m07721 expressed protein                             27   9.0  

>At3g06710.1 68416.m00794 expressed protein
          Length = 302

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -1

Query: 483 FAYLHLFLDIKHVSHEHTARATNWGIVYFHERHCI-NTIEHQVNCLRAQVCCADVKLPSI 307
           FAYL +FL ++ +S     R  N GI        + + I   +  L A +C   + L S+
Sbjct: 189 FAYLGIFLTLRQISFPAIVRIRNVGINKLPSMWLLQDVIGSIITTLLATLCIPYLLLKSL 248

Query: 306 RPCIVCHPSAEHVIE 262
            P +    SA   IE
Sbjct: 249 LPLLGFSRSANPAIE 263


>At1g20340.1 68414.m02538 plastocyanin similar to plastocyanin
           GI:1865683 from [Arabidopsis thaliana]
          Length = 167

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -2

Query: 395 TNATVSIPSNTKLTASVLKSAA 330
           T+ATV+IPS T L AS +KS+A
Sbjct: 5   TSATVAIPSFTGLKASTIKSSA 26


>At1g10090.1 68414.m01137 expressed protein 
          Length = 762

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 315 PSIRPCIVCHPSAEHVIEAIQDISNDTRFVEIG 217
           PS++ C++C P+A +  + I + ++  + +E+G
Sbjct: 255 PSLKSCVLCGPAATNSFQIISNETDSVKGLELG 287


>At5g25320.1 68418.m03004 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 500

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 465 FLDIKHVSHEHTARATNWGIVYFHERHCINTIEHQVNCLRA 343
           F+D+ HV  EH  + T+  ++  H +H I T   + + ++A
Sbjct: 77  FMDVFHVKDEHGNKLTDKSVIN-HIKHAIGTSRRESDFIKA 116


>At1g70990.1 68414.m08190 proline-rich family protein
          Length = 176

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -2

Query: 419 PTGVLFISTNATVSIPSNTKLT---ASVLKSAALTLNFPVYVHVSYATHLLSTSLKPYKT 249
           P  + F     T+++P  T+ T   A+ L +  + L FP+ ++ S ++        P K 
Sbjct: 25  PLFIRFSRHITTLTMPEKTRRTKALAATLLTTVVFLTFPMIINASDSSTNRKLEEDPIKC 84

Query: 248 SPMIPALLRSVYTPPGTEPRTAIDP 174
           +P +  +      PP   P +   P
Sbjct: 85  TPCLQNIPPPSPPPPSPPPPSQACP 109


>At1g67660.1 68414.m07721 expressed protein
          Length = 355

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 188 SAALCRVGYIPISTKRVSLEMSCMASM-TCSADGWHTIHGRILGSLTSAQQ 337
           S  +CRV    +   +V+L    +++M TCS  G+HT   +  GS++S ++
Sbjct: 34  SVCVCRV----LKPNKVALNSMILSAMRTCSISGFHTHLPKSSGSVSSRKR 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,804
Number of Sequences: 28952
Number of extensions: 275442
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)