Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12j17f
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0101 - 17283293-17284009                                         29   2.0  
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791...    29   3.4  
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    27   7.9  
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    27   7.9  
02_05_0423 - 28834380-28835852,28836987-28837109                       27   7.9  

>03_04_0101 - 17283293-17284009
          Length = 238

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 18  PGKMKVAIVFMGLIALGFSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLFEHY 176
           PG ++ A   MGL+A  ++LP P    +E+ R  L  + D+  HD   LF  Y
Sbjct: 81  PGAIRAA---MGLVASVYALPPPHAGTLEDARLILGKVFDD-HHDATWLFRLY 129


>04_04_0116 +
           22877296-22877482,22877578-22877627,22879057-22879180,
           22879266-22879373,22879462-22880084
          Length = 363

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 351 IGERVKRARHTLSGRDFTSYIND 419
           +G+R+ R R  L G+ + +YIND
Sbjct: 92  VGQRIARGRFVLDGKVYHTYIND 114


>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 370 GPDTLLADATSLPTLTILSVNSP 438
           G D LL+ ATS P LT+L ++ P
Sbjct: 115 GDDALLSLATSCPRLTVLRLSEP 137


>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 560 LTLPQSTEHGV-PFLALKVLKSYSKFFVLSEFLFVQG 453
           L+ PQ  EH + PFLALK+  +  +  +L  +  ++G
Sbjct: 680 LSAPQREEHRIGPFLALKIFHTNREILLLKAYSGLKG 716


>02_05_0423 - 28834380-28835852,28836987-28837109
          Length = 531

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 27  MKVAIVFMGLIALGFSLPQPKKSFVENFR 113
           +KVA+V +G +A+G  L QP   FVE  R
Sbjct: 476 LKVAVVSLGAVAMGLVL-QPALRFVEKKR 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,125
Number of Sequences: 37544
Number of extensions: 230821
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)