Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12j12f
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.50 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   3.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 219 NMTTFRA---YPLLPSYQARSPSSLWASRDQYSDSS 121
           N+TT +    Y L P+Y+ R    LW   +Q SD +
Sbjct: 395 NLTTRQVRTLYKLPPNYEIRHKFKLWNFNNQISDDN 430


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 140  TSTPTPARGPALRASAGSASTPRHPGGNR 54
            T   +P R  A  AS+  + TPR   G+R
Sbjct: 925  THAGSPCRNSASPASSDRSGTPRSTNGDR 953


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 140 SRDAQSELGERAWYDGSSGYARNVVMFLG 226
           + D    + E  WYD S      V +F+G
Sbjct: 274 TEDLYFAIYEMHWYDASKQIQNEVFIFMG 302


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 389 PSKPSPLPGRLGS 351
           PS P P PG LGS
Sbjct: 209 PSTPYPPPGSLGS 221


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 427 HHRCVGTRGATPLYCGHRR 483
           HH+ +G  GAT +Y   +R
Sbjct: 136 HHQLLGHFGATKVYNSMKR 154


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 138 QYSDSSSGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQ 25
           QYS S    G     R +  P + R   +  NPY RP+
Sbjct: 202 QYSQSR---GRHNQSRSKRQPKTGREDQTRRNPYYRPR 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,050
Number of Sequences: 336
Number of extensions: 2340
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)