Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j06f
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 115 2e-26
At3g05540.1 68416.m00607 translationally controlled tumor family... 92 3e-19
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 34 0.060
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 34 0.060
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 30 1.3
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 30 1.3
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 29 2.3
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 6.9
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 27 6.9
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 6.9
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 115 bits (277), Expect = 2e-26
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Frame = +3
Query: 81 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 251
M +Y+D++TGDE+ SD++ K ++ +++EV G+ VT D+ I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 252 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 431
D + + VDIV RL E + DKK + Y+K Y+K L KL E+ DQ VFK +
Sbjct: 60 VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115
Query: 432 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGL 581
K +L R + QFF GE M D + Y+ +G+ P ++F HGL
Sbjct: 116 GATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK--EGSTNPTFLYFAHGL 163
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 91.9 bits (218), Expect = 3e-19
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Frame = +3
Query: 81 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 254
M +Y+DI+TGDE+ SD++ K ++ G L ++EG NPS EE DEG
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47
Query: 255 DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 434
D VDI+ RL E +F DKK + +++K Y+K+L KL+ + E+FK ++
Sbjct: 48 DDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIES 103
Query: 435 VMKDILGRFKELQFFTGESMDC-DGMVAMMEYRDFDGTQIPIMMFFKHGL 581
K ++ + K+ QFF GESM+ +G + YR +G P ++ +GL
Sbjct: 104 ATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPTFLYLAYGL 151
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 34.3 bits (75), Expect = 0.060
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 108 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 275
G+ S K +++D V+ +T G +T +G+ EGF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 34.3 bits (75), Expect = 0.060
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +3
Query: 249 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVAKLEEKAPDQV 407
G D +SG++ + + + Y G+ + +LY + D M+ + KL P +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243
Query: 408 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 497
EVFK+N N + ++ F ++ FF GE D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +3
Query: 198 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 377
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 378 KL------EEKAPDQVEVFKTNMN 431
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +3
Query: 198 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 377
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 378 KL------EEKAPDQVEVFKTNMN 431
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 191 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 36
SRHQP+ V D + E T+ + + +LHFDG N N N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 426 MNKVMKDILGRFKELQFFTGE---SMDCDGM 509
+NK++KDI+ R+K LQ + + DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 219 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 365
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 596
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 219 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 365
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,094
Number of Sequences: 28952
Number of extensions: 240976
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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